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Group: EisenLab - with tag transcription_factor [23 articles]

Recent papers posted by members of the EisenLab group with tag transcription_factor
  • Using DNA duplex stability information for transcription factor binding site discovery.
    Pac Symp Biocomput (2008), pp. 453-464.
  • Use of an evolutionary model to provide evidence for a wide heterogeneity of required affinities between transcription factors and their binding sites in yeast.
    Pac Symp Biocomput (2008), pp. 489-500.
    by RW Lusk, MB Eisen
  • Delimiting the conserved features of hunchback function for the trunk organization of insects.
    Development (23 January 2008)
    by Henrique Marques-Souza, Manuel Aranda, Diethard Tautz
  • Fungal CSL transcription factors
    BMC Genomics, Vol. 8 (13 July 2007), 233.
    by Martin Prevorovsky, Frantisek Puta, Petr Folk
    posted to fungal notch transcription_factor by stajich to the group EisenLab on 2008-01-11 19:44:32 as ** along with 1 group Berkeley Mycology
  • A Bacterial Effector Acts as a Plant Transcription Factor and Induces a Cell Size Regulator
    Science, Vol. 318, No. 5850. (26 October 2007), pp. 648-651.
    by Sabine Kay, Simone Hahn, Eric Marois, Gerd Hause, Ulla Bonas
  • The enhanceosome and transcriptional synergy.
    Cell, Vol. 92, No. 1. (9 January 1998), pp. 5-8.
    by M Carey
    posted to enhanceosome review transcription_factor by dpollard to the group EisenLab on 2007-10-31 20:42:02 as ***
  • Enhanceosomes.
    Curr Opin Genet Dev, Vol. 11, No. 2. (April 2001), pp. 205-208.
    by M Merika, D Thanos
    posted to enhanceosome review transcription_factor by dpollard to the group EisenLab on 2007-10-31 20:41:32 as ***
  • Context-dependent transcription: all politics is local.
    Gene, Vol. 313 (14 August 2003), pp. 43-57.
    by M Alvarez, SJ Rhodes, JP Bidwell
    posted to enhanceosome review transcription_factor by dpollard to the group EisenLab on 2007-10-31 20:40:56 as ***
  • Orthologous Transcription Factors in Bacteria Have Different Functions and Regulate Different Genes
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e175.
    by Morgan N Price, Paramvir S Dehal, Adam P Arkin
  • Transcription factor concentrations versus binding site affinities in the yeast S. cerevisiae.
    Phys Biol, Vol. 4, No. 2. (June 2007), pp. 134-143.
    posted to yeast transcription_factor dna_binding_affinity by cwbrown to the group EisenLab on 2007-08-10 18:23:12 as ** along with 1 person nklee
  • Probing Transcription Factor Dynamics at the Single-Molecule Level in a Living Cell
    Science, Vol. 316, No. 5828. (25 May 2007), pp. 1191-1194.
    by Johan Elf, Gene-Wei Li, Sunney X Xie
  • ChIP-on-chip protocol for genome-wide analysis of transcription factor binding in Drosophila melanogaster embryos.
    Nat Protoc, Vol. 1, No. 6. (2006), pp. 2839-2855.
  • Quantifying DNA-protein binding specificities by using oligonucleotide mass tags and mass spectroscopy
    PNAS, Vol. 104, No. 9. (27 February 2007), pp. 3061-3066.
    by Lingang Zhang, Simon Kasif, And C Cantor
    posted to transcription_factor method mass_spec dna_binding by cwbrown to the group EisenLab on 2007-03-29 22:07:00 as ** along with 2 people jyuh zwang
  • Origin and diversification of the basic helix-loop-helix gene family in metazoans: insights from comparative genomics
    BMC Evolutionary Biology, Vol. 7 (02 March 2007), 33.
    by Elena Simionato, Valerie Ledent, Gemma Richards, Morgane Thomas-Chollier, Pierre Kerner, David Coornaert, Bernard M Degnan, Michel Vervoort
  • Analysis of In-Vivo LacR-Mediated Gene Repression Based on the Mechanics of DNA Looping.
    PLoS ONE, Vol. 1 (2006)
    by Y Zhang, AE McEwen, DM Crothers, SD Levene
    posted to transcription_factor e_coli dna_looping dna_binding by cwbrown to the group EisenLab on 2007-03-29 20:46:46 as **
  • DNA Familial Binding Profiles Made Easy: Comparison of Various Motif Alignment and Clustering Strategies
    PLoS Computational Biology, Vol. preprint, No. 2007. (1 February 2007), e61.eor.
    by Shaun Mahony, Philip Auron, Panayiotis Benos
    posted to transcription_factor motifs method dna_binding by cwbrown to the group EisenLab on 2007-03-29 20:45:40 as **
  • In vitro analysis of DNA-protein interactions by proximity ligation.
    Proc Natl Acad Sci U S A, Vol. 104, No. 9. (27 February 2007), pp. 3067-3072.
  • The identification and functional characterisation of conserved regulatory elements in developmental genes.
    Brief Funct Genomic Proteomic, Vol. 3, No. 4. (February 2005), pp. 332-350.
  • Conserved sequences and the evolution of gene regulatory signals.
    Curr Opin Genet Dev, Vol. 15, No. 6. (December 2005), pp. 628-633.
    by MD Adams
  • Reprogrammable recognition codes in bicoid homeodomain-DNA interaction.
    Mol Cell Biol, Vol. 20, No. 20. (October 2000), pp. 7673-7684.
    by V Dave, C Zhao, F Yang, CS Tung, J Ma
    posted to transcription_factor structure dna_binding by cwbrown to the group EisenLab on 2007-03-02 19:36:34 as **
  • Structure-based prediction of C2H2 zinc-finger binding specificity: sensitivity to docking geometry.
    Nucleic Acids Res (30 January 2007)
    by Trevor W W Siggers, Barry Honig
  • Molecular paleoecology: using gene regulatory analysis to address the origins of complex life cycles in the late Precambrian
    Evolution & Development, Vol. 9, No. 1. (February 2007), pp. 10-24.
    posted to transcription_factor paleoecology by dpollard to the group EisenLab on 2007-01-19 16:54:17 as **
  • GeneSpeed: protein domain organization of the transcriptome.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by A Kutchma, N Quayum, J Jensen
    posted to transcription_factor domain database by dpollard to the group EisenLab on 2007-01-19 15:56:18 as **
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