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Group: EisenLab - with tag no-tag [197 articles]

Recent papers posted by members of the EisenLab group with tag no-tag
  • The Making of a Fly: The Genetics of Animal Design
    (15 April 1992)
    by Peter A Lawrence
    posted to no-tag by indigoviolet to the group EisenLab on 2007-12-15 03:00:50 as **
  • WebLogo: A Sequence Logo Generator
    Genome Res., Vol. 14, No. 6. (1 June 2004), pp. 1188-1190.
    by Gavin E Crooks, Gary Hon, John-Marc Chandonia, Steven E Brenner
    posted to no-tag by indigoviolet to the group EisenLab on 2007-12-12 15:10:46 as ** along with 4 people and 1 group analogAI xiaobeizhao sobolevnrm yevishere baker-group
  • Sequence logos: a new way to display consensus sequences.
    Nucleic Acids Res, Vol. 18, No. 20. (25 October 1990), pp. 6097-6100.
    by TD Schneider, RM Stephens
    posted to no-tag by indigoviolet to the group EisenLab on 2007-12-12 15:08:00 as ** along with 3 people austin analogAI yevishere
  • Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters.
    J Mol Biol, Vol. 193, No. 4. (20 February 1987), pp. 723-750.
    by OG Berg, PH von Hippel
    posted to no-tag by indigoviolet to the group EisenLab on 2007-12-12 15:05:58 as ** along with 7 people and 1 group zambujo brant jjray lusk discreteonyxorb cisevol Ema cis-regulatory-evolution
  • An overview of the structures of protein-DNA complexes.
    Genome Biol, Vol. 1, No. 1. (2000)
    by NM Luscombe, SE Austin, HM Berman, JM Thornton
    posted to no-tag by indigoviolet to the group EisenLab on 2007-12-12 14:49:58 as ** along with 4 people kaarsinogen medic0747 emptyhb jonsta247
  • Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster.
    Bioinformatics, Vol. 21, No. 8. (15 April 2005), pp. 1747-1749.
    by CM Bergman, JW Carlson, SE Celniker
    posted to no-tag by indigoviolet to the group EisenLab on 2007-12-12 14:40:40 as ** along with 1 person and 1 group yas T_lab
  • GOstat: find statistically overrepresented Gene Ontologies within a group of genes.
    Bioinformatics, Vol. 20, No. 9. (12 June 2004), pp. 1464-1465.
    by T Beissbarth, TP Speed
    posted to no-tag by indigoviolet to the group EisenLab on 2007-12-12 14:40:11 as ** along with 6 people ellakat Yanno miguel RMGraze jdiggans yevishere
  • Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.
    Nat Genet, Vol. 25, No. 1. (May 2000), pp. 25-29.
    by M Ashburner, CA Ball, JA Blake, D Botstein, H Butler, JM Cherry, AP Davis, K Dolinski, SS Dwight, JT Eppig, MA Harris, DP Hill, L Issel-Tarver, A Kasarskis, S Lewis, JC Matese, JE Richardson, M Ringwald, GM Rubin, G Sherlock
    posted to no-tag by indigoviolet to the group EisenLab on 2007-12-12 14:35:50 as ** along with 34 people and 5 groups fongenae rvosa roys dgront marck carlk pablomendes CitoJam aalibes miguel dragonrez lfriedl chad_davis yas balajis benny dullhunk nirfriedman fisherp caporaso helliontroy zlu gurkanbebek djkt massivemayhem incovoma leechuck aconesa sgoetz javamint bootsy PunkRock natstreet naegele FAB-lab kdl Bioinformatics T_lab biomedical-nlp
  • Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks.
    Mol Biol Evol, Vol. 21, No. 1. (January 2004), pp. 36-44.
    by K Tamura, S Subramanian, S Kumar
    posted to no-tag by indigoviolet to the group EisenLab on 2007-12-12 14:32:29 as ** along with 1 person isimpson
  • Gene Recognition Via Spliced Sequence Alignment
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 93, No. 17. (1996), pp. 9061-9066.
    by Mikhail S Gelfand, Andrey A Mironov, Pavel A Pevzner
    posted to no-tag by indigoviolet to the group EisenLab on 2007-12-12 14:20:24 as **
  • Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase.
    Science, Vol. 249, No. 4968. (3 August 1990), pp. 505-510.
    by C Tuerk, L Gold
    posted to no-tag by indigoviolet to the group EisenLab on 2007-12-12 14:09:06 as ** along with 2 people and 1 group jonathanjacobs leelarcombe Molecular Biology
  • Detecting Coevolution in and among Protein Domains
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e211.
    by Chen-Hsiang Yeang, David Haussler
    posted to no-tag by cwbrown to the group EisenLab on 2007-11-06 21:29:42 as ***
  • Genome-wide acceleration of protein evolution in flies (Diptera).
    BMC Evol Biol, Vol. 6 (2006)
    by J Savard, D Tautz, MJ Lercher
    posted to no-tag by Stew to the group EisenLab on 2007-09-17 20:00:25 as **
  • An optimized transgenesis system for Drosophila using germ-line-specific phiC31 integrases.
    Proc Natl Acad Sci U S A, Vol. 104, No. 9. (27 February 2007), pp. 3312-3317.
    by J Bischof, RK Maeda, M Hediger, F Karch, K Basler
    posted to no-tag by Stew to the group EisenLab on 2007-09-17 19:30:01 as **
  • Highly conserved non-coding sequences are associated with vertebrate development.
    PLoS Biol, Vol. 3, No. 1. (January 2005)
    by A Woolfe, M Goodson, DK Goode, P Snell, GK McEwen, T Vavouri, SF Smith, P North, H Callaway, K Kelly, K Walter, I Abnizova, W Gilks, YJ Edwards, JE Cooke, G Elgar
    posted to no-tag by Stew to the group EisenLab on 2007-09-13 18:02:33 as ***** along with 7 people and 1 group awoolfe djkt sujaikumar maximilianh cisevol rrhudson gelgar cis-regulatory-evolution
  • The regulatory genome and the computer.
    Dev Biol (10 August 2007)
    by Sorin Istrail, Smadar Ben-Tabou B De-Leon, Eric H H Davidson
    posted to no-tag by Stew to the group EisenLab on 2007-09-11 06:07:37 as ** along with 1 person dchughes
  • Growth control of the eukaryote cell: a systems biology study in yeast
    Journal of Biology, Vol. 6 (30 April 2007), 4.
    by Juan I Castrillo, Leo A Zeef, David C Hoyle, Nianshu Zhang, Andrew Hayes, David CJ Gardner, Michael J Cornell, June Petty, Luke Hakes, Leanne Wardleworth, Bharat Rash, Marie Brown, Warwick B Dunn, David Broadhurst, Kerry O'Donoghue, Svenja S Hester, Tom PJ Dunkley, Sarah R Hart, Neil Swainston, Peter Li, Simon J Gaskell, Norman W Paton, Kathryn S Lilley, Douglas B Kell, Stephen G Oliver
    posted to no-tag by Stew to the group EisenLab on 2007-09-07 16:44:34 as *** along with 8 people alanrw aalibes alexg dullhunk balabu dylan77 cabbagezs roys
  • RankMotif++: a motif-search algorithm that accounts for relative ranks of K-mers in binding transcription factors.
    Bioinformatics, Vol. 23, No. 13. (1 July 2007)
    by X Chen, TR Hughes, Q Morris
    posted to no-tag by Stew to the group EisenLab on 2007-08-30 23:24:17 as **
  • Tinkering with transcription factor proteins: the role of transcription factor adaptation in developmental evolution.
    Novartis Found Symp, Vol. 284 (2007)
    by GP Wagner, AM Pyle
    posted to no-tag by Stew to the group EisenLab on 2007-08-24 05:26:51 as *****
  • Evolutionarily conserved E(y)2/Sus1 protein is essential for the barrier activity of Su(Hw)-dependent insulators in Drosophila.
    Mol Cell, Vol. 27, No. 2. (20 July 2007), pp. 332-338.
    by M Kurshakova, O Maksimenko, A Golovnin, M Pulina, S Georgieva, P Georgiev, A Krasnov
    posted to no-tag by Stew to the group EisenLab on 2007-08-23 21:57:33 as **
  • Divergent Evolution of Human p53 Binding Sites: Cell Cycle Versus Apoptosis.
    PLoS Genet, Vol. 3, No. 7. (27 July 2007)
    by MM Horvath, X Wang, MA Resnick, DA Bell
    posted to no-tag by Stew to the group EisenLab on 2007-08-10 14:47:32 as **
  • Normalization and experimental design for ChIP-chip data
    BMC Bioinformatics, Vol. 8 (25 June 2007), 219.
    by Shouyong Peng, Artyom A Alekseyenko, Erica Larschan, Mitzi I Kuroda, Peter J Park
    posted to no-tag by Stew to the group EisenLab on 2007-08-02 21:25:47 as ** along with 5 people and 1 group baldigroup caseybrown jyuh kengg yevishere Plantandetc
  • SEAM: a Stochastic EM-type Algorithm for Motif-finding in biopolymer sequences.
    J Bioinform Comput Biol, Vol. 5, No. 1. (February 2007), pp. 47-77.
    by C Bi
    posted to no-tag by Stew to the group EisenLab on 2007-08-02 21:25:15 as ***
  • Evolution of the olfactory code in the Drosophila melanogaster subgroup.
    Proc Biol Sci, Vol. 270, No. 1531. (22 November 2003), pp. 2333-2340.
    by MC Stensmyr, T Dekker, BS Hansson
    posted to no-tag by Stew to the group EisenLab on 2007-08-02 01:14:21 as ***
  • Gustatory perception and behavior in Drosophila melanogaster.
    Curr Biol, Vol. 15, No. 17. (6 September 2005)
    by H Amrein, N Thorne
    posted to no-tag by Stew to the group EisenLab on 2007-08-02 00:51:25 as ***
  • Drosophila gustatory receptors: from gene identification to functional expression.
    J Insect Physiol, Vol. 50, No. 6. (June 2004), pp. 469-477.
    by S Chyb
    posted to no-tag by Stew to the group EisenLab on 2007-08-02 00:50:32 as ***
  • Receptors and neurons for fly odors in Drosophila.
    Curr Biol, Vol. 17, No. 7. (3 April 2007), pp. 606-612.
    by W van der Goes van Naters, JR Carlson
    posted to no-tag by Stew to the group EisenLab on 2007-08-02 00:48:41 as ***
  • Natural polymorphism affecting learning and memory in Drosophila.
    Proc Natl Acad Sci U S A (19 July 2007)
    by Frederic Mery, Amsale T T Belay, Anthony K-C K So, Marla B B Sokolowski, Tadeusz J J Kawecki
    posted to no-tag by Stew to the group EisenLab on 2007-08-02 00:47:24 as *** along with 1 person tmk
  • Evolution of olfactory receptor genes in the human genome
    PNAS, Vol. 100, No. 21. (14 October 2003), pp. 12235-12240.
    by Yoshihito Niimura, Masatoshi Nei
    posted to no-tag by Stew to the group EisenLab on 2007-08-02 00:45:46 as *** along with 1 person adamsdi
  • Comparative evolutionary analysis of olfactory receptor gene clusters between humans and mice.
    Gene, Vol. 346 (14 February 2005), pp. 13-21.
    by Y Niimura, M Nei
    posted to no-tag by Stew to the group EisenLab on 2007-08-02 00:38:59 as *** along with 2 people and 1 group klo isaacstone olfscience
  • Evolutionary dynamics of olfactory receptor genes in Drosophila species
    PNAS, Vol. 104, No. 17. (24 April 2007), pp. 7122-7127.
    by Masafumi Nozawa, Masatoshi Nei
    posted to no-tag by Stew to the group EisenLab on 2007-08-02 00:38:21 as ***
  • Genome-Wide Identification of Human Functional DNA Using a Neutral Indel Model.
    PLoS Comput Biol, Vol. 2, No. 1. (13 January 2006)
    by Gerton Lunter, Chris P P Ponting, Jotun Hein
    posted to no-tag by Stew to the group EisenLab on 2007-07-29 22:15:23 as *** along with 9 people and 1 group bpcusack aprasad eckart_bindewald eweaver lhonigberg acidwizard juliettecolinas cisevol mailund cis-regulatory-evolution
  • Megabase deletions of gene deserts result in viable mice.
    Nature, Vol. 431, No. 7011. (21 October 2004), pp. 988-993.
    by MA Nóbrega, Y Zhu, I Plajzer-Frick, V Afzal, EM Rubin
    posted to no-tag by Stew to the group EisenLab on 2007-07-29 22:09:13 as *** along with 3 people and 1 group ccots elzodw blobbybirdman UH - Computational Biology
  • The Genographic Project Public Participation Mitochondrial DNA Database
    PLoS Genetics, Vol. 3, No. 6. (1 June 2007), e104.
    by Doron M Behar, Saharon Rosset, Jason Blue-Smith, Oleg Balanovsky, Shay Tzur, David Comas, John R Mitchell, Lluis Quintana-Murci, Chris Tyler-Smith, Spencer R Wells
    posted to no-tag by brant to the group EisenLab on 2007-07-24 22:00:20 as ** along with 2 people Archaeogenetics larios
  • A New Approach for Using Genome Scans to Detect Recent Positive Selection in the Human Genome.
    PLoS Biol, Vol. 5, No. 7. (19 June 2007)
    by Kun Tang, Kevin R R Thornton, Mark Stoneking
    posted to no-tag by brant to the group EisenLab on 2007-07-24 20:01:11 as ** along with 4 people and 2 groups dchughes madhadron sebastien_vigneau xingxu G4ID Genetics-of-Gambling
  • OrthoMCL: identification of ortholog groups for eukaryotic genomes.
    Genome Res, Vol. 13, No. 9. (September 2003), pp. 2178-2189.
    by L Li, CJ Stoeckert, DS Roos
    posted to no-tag by indigoviolet to the group EisenLab on 2007-07-11 01:56:30 as ** along with 6 people mdimmic operon AaronDarling bluto maximilianh ninch
  • Benchmarking ortholog identification methods using functional genomics data.
    Genome Biol, Vol. 7, No. 4. (13 April 2006)
    by Tim Hulsen, Martijn A Huynen, Jacob de Vlieg, Peter M Groenen
    posted to no-tag by indigoviolet to the group EisenLab on 2007-07-11 01:25:52 as ** along with 6 people cerca tmmurali alpae operon bluto bootsy
  • Assessing performance of orthology detection strategies applied to eukaryotic genomes.
    PLoS ONE, Vol. 2 (2007)
    by F Chen, AJ Mackey, JK Vermunt, DS Roos
    posted to no-tag by indigoviolet to the group EisenLab on 2007-07-11 01:24:21 as ** along with 9 people and 2 groups bpcusack cerca natstreet icases operon rvosa stajich cjeans winterschlaefer FAB-lab TNT
  • Searching for genetic determinants in the new millennium
    Nature, Vol. 405, No. 6788. (15 June 2000), pp. 847-856.
    by Neil J Risch
    posted to no-tag by indigoviolet to the group EisenLab on 2007-07-10 11:18:05 as ** along with 1 person raiyar
  • Prospects for whole-genome linkage disequilibrium mapping of common disease genes.
    Nat Genet, Vol. 22, No. 2. (June 1999), pp. 139-144.
    by L Kruglyak
    posted to no-tag by indigoviolet to the group EisenLab on 2007-07-10 03:34:50 as *****
  • Advances in Genetics http://www.sciencedirect.com/science/bookseries/00652660
    posted to no-tag by indigoviolet to the group EisenLab on 2007-07-09 10:12:03 as *****
  • Linkage and association: basic concepts.
    Adv Genet, Vol. 42 (2001), pp. 45-66.
    by IB Borecki, BK Suarez
    posted to no-tag by indigoviolet to the group EisenLab on 2007-07-09 10:06:00 as **
  • Childhood Origins of Adult Resistance to Science
    Science, Vol. 316, No. 5827. (18 May 2007), pp. 996-997.
    by Paul Bloom, Deena S Weisberg
    posted to no-tag by brant to the group EisenLab on 2007-07-06 22:05:42 as ** along with 6 people and 1 group Borelli OriginalLurch amorgan77 jbchang diddyman ex clab
  • Systematic detection of statistically overrepresented DNA motif association rules.
    Genome Inform, Vol. 17, No. 1. (2006), pp. 124-133.
    by JM Lin, Z Weng
    posted to no-tag by indigoviolet to the group EisenLab on 2007-06-15 09:48:10 as ** along with 1 person dpollard
  • Functional single nucleotide polymorphism-based association studies.
    Hum Genomics, Vol. 2, No. 6. (June 2006), pp. 391-402.
    by VE Carlton, JS Ireland, F Useche, M Faham
    posted to no-tag by indigoviolet to the group EisenLab on 2007-06-10 10:33:40 as **
  • Bioinformatics approaches and resources for single nucleotide polymorphism functional analysis.
    Brief Bioinform, Vol. 6, No. 1. (March 2005), pp. 44-56.
    by S Mooney
    posted to no-tag by indigoviolet to the group EisenLab on 2007-06-10 10:33:27 as **** along with 1 person and 1 group ramensky Bioinformatics
  • Genome-wide association studies for common diseases and complex traits
    Nature Reviews Genetics, Vol. 6, No. 2. (01 February 2005), pp. 95-108.
    by Joel N Hirschhorn, Mark J Daly
    posted to no-tag by indigoviolet to the group EisenLab on 2007-06-10 10:33:16 as **** along with 4 people caldavis oilcan massivemayhem dbgrant
  • Linkage disequilibrium maps and association mapping.
    J Clin Invest, Vol. 115, No. 6. (June 2005), pp. 1425-1430.
    by NE Morton
    posted to no-tag by indigoviolet to the group EisenLab on 2007-06-10 10:32:46 as ****
  • Strategies for the detection of copy number and other structural variants in the human genome.
    Hum Genomics, Vol. 2, No. 6. (June 2006), pp. 403-414.
    by AR Carson, L Feuk, M Mohammed, SW Scherer
    posted to no-tag by indigoviolet to the group EisenLab on 2007-06-10 10:31:07 as **** along with 1 person and 1 group rdiaz Bioinformatics
  • Clinical applications of whole-genome association studies: future applications at the bedside
    Expert Review of Molecular Diagnostics, Vol. 6, No. 4. (July 2006), pp. 551-565.
    by Motsinger, A Alison, Ritchie, D Marylyn, Dobrin, E Seth
    posted to no-tag by indigoviolet to the group EisenLab on 2007-06-10 10:30:39 as ****
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