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Group: EisenLab - with tag clustering [9 articles]

Recent papers posted by members of the EisenLab group with tag clustering
  • CisModule: de novo discovery of cis-regulatory modules by hierarchical mixture modeling.
    Proc Natl Acad Sci U S A, Vol. 101, No. 33. (17 August 2004), pp. 12114-12119.
    by Q Zhou, WH Wong
    posted to ab_initio cis_regulatory_elements clustering method prediction by dpollard to the group EisenLab on 2007-12-05 22:46:33 as read along with 2 people indigoviolet ep161302
  • A probabilistic method to detect regulatory modules.
    Bioinformatics, Vol. 19 Suppl 1 (2003)
    by S Sinha, E van Nimwegen, ED Siggia
    posted to algorithm cis-regulation clustering comparative computational by indigoviolet to the group EisenLab on 2007-11-19 03:27:58 as ** along with 3 people and 1 group dquest lusk cisevol cis-regulatory-evolution
  • Computational prediction of transcription-factor binding site locations.
    Genome Biol, Vol. 5, No. 1. (2003)
    by ML Bulyk
    posted to review prediction clustering cis-regulatory by Stew to the group EisenLab on 2007-09-17 20:40:18 as ** along with 6 people kaarsinogen lusk nklee yevishere xili03 aalibes
  • Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome.
    Proc Natl Acad Sci U S A, Vol. 99, No. 2. (22 January 2002), pp. 757-762.
    by BP Berman, Y Nibu, BD Pfeiffer, P Tomancak, SE Celniker, M Levine, GM Rubin, MB Eisen
    posted to prediction modules drosophila clustering cis-regulatory by Stew to the group EisenLab on 2007-09-17 20:14:51 as read along with 3 people indigoviolet emptyhb csdhwang
  • SPACER: identification of cis-regulatory elements with non-contiguous critical residues.
    Bioinformatics, Vol. 23, No. 8. (15 April 2007), pp. 1029-1031.
    by A Chakravarty, JM Carlson, RS Khetani, CE DeZiel, RH Gross
    posted to prediction method clustering cis_regulatory_elements binding_site by dpollard to the group EisenLab on 2007-05-23 01:10:50 as **
  • A phylogenetic Gibbs sampler that yields centroid solutions for cis regulatory site prediction.
    Bioinformatics (8 May 2007)
    by Lee A A Newberg, William A A Thompson, Sean Conlan, Thomas M M Smith, Lee Ann A McCue, Charles E E Lawrence
    posted to prediction motif method discovery clustering cis_regulatory_elements by dpollard to the group EisenLab on 2007-05-23 00:29:25 as ** along with 3 people cjeans sconlan siebert
  • Discovering transcriptional regulatory regions in Drosophila by a nonalignment method for phylogenetic footprinting.
    Proc Natl Acad Sci U S A (29 March 2007)
    by Alona Sosinsky, Barry Honig, Richard S S Mann, Andrea Califano
    posted to prediction method enhancer drosophila comparative clustering by dpollard to the group EisenLab on 2007-04-09 17:43:36 as ** along with 4 people and 1 group Stew maximilianh cisevol isimpson cis-regulatory-evolution
  • Clustering of phosphorylation site recognition motifs can be exploited to predict the targets of cyclin-dependent kinase.
    Genome Biology, Vol. 8 (22 February 2007), R23.
    by Alan M Moses, Jean-Karim Heriche, Richard Durbin
    posted to protein motif clustering by dpollard to the group EisenLab on 2007-03-27 16:28:13 as ** along with 1 person gjuggler
  • Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis
    Mol Syst Biol, Vol. 3 (16 January 2007)
    by Sean D Hooper, Stephanie Boue, Roland Krause, Lars J Jensen, Christopher E Mason, Murad Ghanim, Kevin P White, Eileen EM Furlong, Peer Bork
    posted to gene-expression embryogenesis embryo drosophila clustering by indigoviolet to the group EisenLab on 2007-01-19 08:27:43 as ** along with 4 people dpollard adepace uz_labu_laimi larsjuhljensen
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