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Group: Durbin group - library [35 articles]

Recent papers posted by members of the Durbin group group
  • Systematic discovery of in vivo phosphorylation networks.
    Cell, Vol. 129, No. 7. (29 June 2007), pp. 1415-1426.
    by R Linding, LJ Jensen, GJ Ostheimer, MA van Vugt, C Jørgensen, IM Miron, F Diella, K Colwill, L Taylor, K Elder, P Metalnikov, V Nguyen, A Pasculescu, J Jin, JG Park, LD Samson, JR Woodgett, RB Russell, P Bork, MB Yaffe, T Pawson
    posted to networks phosphorylation protein by lp2 to the group Durbin group on 2008-03-10 14:56:40 as ** along with 15 people and 1 group bouncingbudha chad_davis carlk daed Evangelia renatomilani jyuh skhadar julius zwang cdppublications psique robrussell snowcrash larsjuhljensen SysbioMPI-TCells
  • Simple models of genomic variation in human SNP density
    BMC Genomics, Vol. 8 (06 June 2007), 146.
    by Raazesh Sainudiin, Andrew G Clark, Richard T Durrett
    posted to coalescent by lh3 to the group Durbin group on 2008-03-08 10:32:29 as read along with 1 person jyuh
  • Recent and ongoing selection in the human genome
    Nat Rev Genet, Vol. 8, No. 11. (November 2007), pp. 857-868.
    by Rasmus Nielsen, Ines Hellmann, Melissa Hubisz, Carlos Bustamante, Andrew G Clark
    posted to human-evolution positiveselection review selection by lh3 to the group Durbin group on 2008-03-08 10:20:58 as read along with 7 people bpcusack gjuggler dchughes ramensky Garamonfok candypmcg ryanraaum
  • Measurement of the human allele frequency spectrum demonstrates greater genetic drift in East Asians than in Europeans
    Nat Genet, Vol. 39, No. 10. (October 2007), pp. 1251-1255.
    by Alon Keinan, James C Mullikin, Nick Patterson, David Reich
    posted to human-evolution journal-club by lh3 to the group Durbin group on 2008-03-07 16:59:46 as read along with 3 people dchughes ryanraaum dmc
  • Human genome sequence variation and the influence of gene history, mutation and recombination
    Nat Genet, Vol. 32, No. 1. (2002), pp. 135-142.
    by David E Reich, Stephen F Schaffner, Mark J Daly, Gil Mcvean, James C Mullikin, John M Higgins, Daniel J Richter, Eric S Lander, David Altshuler
    posted to human-evolution journal-club by lh3 to the group Durbin group on 2008-03-07 16:51:41 as read along with 3 people massivemayhem candypmcg lp2
  • Exact Computation of the Observed Information Matrix for Hidden Markov Models
    Journal of Computational and Graphical Statistics, Vol. 11 (2002), pp. 678-689.
    by Theodore C Lystig, James P Huges
    posted to hmm math by lh3 to the group Durbin group on 2008-03-07 16:38:05 as read
  • Genetic evidence for complex speciation of humans and chimpanzees
    Nature, Vol. 441, No. 7097. (17 May 2006), pp. 1103-1108.
    by Nick Patterson, Daniel J Richter, Sante Gnerre, Eric S Lander, David Reich
    posted to great-apes human-evolution by lh3 to the group Durbin group on 2008-03-07 16:33:24 as read along with 9 people and 3 groups klouie kentsis great_apes balicea Archaeogenetics cmm larios theseuskf djkt Glimcher_Lab biodiversity_conservation FAB-lab
  • Genomic Relationships and Speciation Times of Human, Chimpanzee, and Gorilla Inferred from a Coalescent Hidden Markov Model
    PLoS Genetics, Vol. 3, No. 2. (1 February 2007), e7.
    by Asger Hobolth, Ole F Christensen, Thomas Mailund, Mikkel H Schierup
    posted to coalescent great-apes hmm human-evolution journal-club by lh3 to the group Durbin group on 2008-03-07 16:32:06 as read along with 6 people usagi-kirin nurban nosada17 berthoums kourai mailund
  • Fast "coalescent" simulation.
    BMC Genet, Vol. 7, No. 1. (15 March 2006)
    by Paul Marjoram, Jeff D Wall
    posted to coalescent smc by lh3 to the group Durbin group on 2008-03-07 16:17:14 as read along with 2 people renewang AaronDarling
  • Mapping trait loci by use of inferred ancestral recombination graphs.
    Am J Hum Genet, Vol. 79, No. 5. (November 2006), pp. 910-922.
    by MJ Minichiello, R Durbin
    posted to coalescent durbingrouppub smc by lh3 to the group Durbin group on 2008-03-07 16:12:30 as read along with 1 person candypmcg
  • Approximating the coalescent with recombination.
    Philos Trans R Soc Lond B Biol Sci, Vol. 360, No. 1459. (29 July 2005), pp. 1387-1393.
    by GA McVean, NJ Cardin
    posted to coalescent smc by lh3 to the group Durbin group on 2008-03-07 16:09:05 as read
  • Genomix: a method for combining gene-finders' predictions, which uses evolutionary conservation of sequence and intron-exon structure.
    Bioinformatics (5 May 2007)
    by Avril Coghlan, Richard Durbin
    posted to durbingrouppub genefinding by dmc to the group Durbin group on 2008-03-07 13:57:39 as read along with 3 people and 1 group indigoviolet stajich GustavoLacerda EisenLab
  • Genome-Wide Analysis of Nucleotide-Level Variation in Commonly Used Saccharomyces cerevisiae Strains.
    PLoS ONE, Vol. 2 (2007)
    by J Schacherer, DM Ruderfer, D Gresham, K Dolinski, D Botstein, L Kruglyak
    posted to sgrp by dmc to the group Durbin group on 2008-03-07 12:57:15 as ** along with 2 people stajich michaelbarton
  • A new approach to estimate parameters of speciation models with application to apes
    Genome Res. (21 August 2007), gr.6409707.
    by Celine Becquet, Molly Przeworski
    posted to speciation by dmc to the group Durbin group on 2008-03-07 12:55:45 as ** along with 2 people ryanraaum mailund
  • Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789
    PNAS, Vol. 104, No. 31. (31 July 2007), pp. 12825-12830.
    by Wu Wei, John H Mccusker, Richard W Hyman, Ted Jones, Ye Ning, Zhiwei Cao, Zhenglong Gu, Dan Bruno, Molly Miranda, Michelle Nguyen, Julie Wilhelmy, Caridad Komp, Raquel Tamse, Xiaojing Wang, Peilin Jia, Philippe Luedi, Peter J Oefner, Lior David, Fred S Dietrich, Yixue Li, Ronald W Davis, Lars M Steinmetz
    posted to sgrp by dmc to the group Durbin group on 2008-03-07 12:51:20 as ** along with 3 people and 1 group lesander raiyar lp2 steinmetzlab
  • Vertebrate gene finding from multiple-species alignments using a two-level strategy.
    Genome Biol, Vol. 7 Suppl 1 (2006)
    by D Carter, R Durbin
    posted to durbingrouppub genefinding by dmc to the group Durbin group on 2008-03-07 12:47:24 as read along with 2 people and 1 group indigoviolet dpollard EisenLab
  • Natural selection on protein-coding genes in the human genome
    Nature, Vol. 437, No. 7062., pp. 1153-1157.
    by Carlos D Bustamante, Adi Fledel-Alon, Scott Williamson, Rasmus Nielsen, Melissa T Hubisz, Stephen Glanowski, David M Tanenbaum, Thomas J White, John J Sninsky, Ryan D Hernandez, Daniel Civello, Mark D Adams, Michele Cargill, Andrew G Clark
    posted to positiveselection by dmc to the group Durbin group on 2008-03-07 11:49:21 as ** along with 15 people and 4 groups shoshin stevanspringer operon jwortman aprasad dayjm balajis marcius dpollard hdopazo djkt JBEgwa01 ramensky Garamonfok iris42 EisenLab FAB-lab BioinfoCIPF SGU-CIPF
  • Detecting a local signature of genetic hitchhiking along a recombining chromosome.
    Genetics, Vol. 160, No. 2. (February 2002), pp. 765-777.
    by Y Kim, W Stephan
    posted to positiveselection by dmc to the group Durbin group on 2008-03-07 11:47:38 as read
  • Estimating the time since the fixation of a beneficial allele.
    Genetics, Vol. 164, No. 4. (August 2003), pp. 1667-1676.
    by M Przeworski
    posted to positiveselection by dmc to the group Durbin group on 2008-03-07 11:43:33 as ** along with 1 person candypmcg
  • SEQUENCE DIVERGENCE, FUNCTIONAL CONSTRAINT, AND SELECTION IN PROTEIN EVOLUTION
    Annual Review of Genomics and Human Genetics, Vol. 4, No. 1. (2003), pp. 213-235.
    by Justin C Fay, Chung I Wu
    posted to positiveselection by dmc to the group Durbin group on 2008-03-07 11:43:14 as **
  • A Map of Recent Positive Selection in the Human Genome.
    PLoS Biol, Vol. 4, No. 3. (7 March 2006)
    by Benjamin F F Voight, Sridhar Kudaravalli, Xiaoquan Wen, Jonathan K K Pritchard
    posted to positiveselection by dmc to the group Durbin group on 2008-03-07 11:42:54 as ** along with 20 people and 6 groups pradiptaray shoshin stevanspringer kentsis bpb balajis indigoviolet ejeffery madhadron breden tiago larios ashandanj hdopazo livingthingdan djkt mbeautru grahamc suizan iris42 Bioinformatics EisenLab FAB-lab SFUAntibodyResearch BioinfoCIPF livingthing
  • How reliable are empirical genomic scans for selective sweeps?
    Genome Res, Vol. 16, No. 6. (June 2006), pp. 702-712.
    by KM Teshima, G Coop, M Przeworski
    posted to positiveselection by dmc to the group Durbin group on 2008-03-07 11:42:36 as ** along with 2 people and 1 group indigoviolet hawksjohnd EisenLab
  • Statistical Tests for Detecting Positive Selection by Utilizing High-Frequency Variants
    Genetics, Vol. 174, No. 3. (1 November 2006), pp. 1431-1439.
    by Kai Zeng, Yun-Xin Fu, Suhua Shi, Chung-I Wu
    posted to positiveselection by dmc to the group Durbin group on 2008-03-07 11:42:10 as ** along with 3 people and 1 group stevanspringer operon ramensky FAB-lab
  • Compound Tests for the Detection of Hitchhiking Under Positive Selection
    Mol Biol Evol (8 June 2007), msm119.
    by Kai Zeng, Suhua Shi, Chung-I Wu
    posted to positiveselection by dmc to the group Durbin group on 2008-03-07 11:40:41 as ** along with 1 person cjeans
  • The signature of positive selection on standing genetic variation.
    Evolution Int J Org Evolution, Vol. 59, No. 11. (November 2005), pp. 2312-2323.
    by M Przeworski, G Coop, JD Wall
    posted to positiveselection by dmc to the group Durbin group on 2008-03-07 11:40:07 as ** along with 1 person ejeffery
  • Simultaneous inference of selection and population growth from patterns of variation in the human genome.
    Proc Natl Acad Sci U S A, Vol. 102, No. 22. (31 May 2005), pp. 7882-7887.
    by SH Williamson, R Hernandez, A Fledel-Alon, L Zhu, R Nielsen, CD Bustamante
    posted to no-tag by dmc to the group Durbin group on 2008-03-07 11:36:08 as ** along with 1 person balajis
  • Inferring Selection in Partially Sequenced Regions
    Mol Biol Evol (28 December 2007), msm273.
    by Jeffrey D Jensen, Kevin R Thornton, Charles F Aquadro
    posted to positiveselection by dmc to the group Durbin group on 2008-03-07 11:35:22 as ** along with 2 people smbe2008 djkt
  • Hitchhiking under positive Darwinian selection.
    Genetics, Vol. 155, No. 3. (July 2000), pp. 1405-1413.
    by JC Fay, CI Wu
    posted to positiveselection by dmc to the group Durbin group on 2008-03-07 11:33:17 as ** along with 2 people operon ramensky
  • The Hitchhiking Effect on Linkage Disequilibrium Between Linked Neutral Loci
    Genetics, Vol. 172, No. 4. (1 April 2006), pp. 2647-2663.
    by Wolfgang Stephan, Yun S Song, Charles H Langley
    posted to positiveselection by dmc to the group Durbin group on 2008-03-07 11:32:13 as ** along with 2 people ccots balicea
  • Linkage disequilibrium as a signature of selective sweeps.
    Genetics, Vol. 167, No. 3. (July 2004), pp. 1513-1524.
    by Y Kim, R Nielsen
    posted to positiveselection by dmc to the group Durbin group on 2008-03-07 11:30:47 as **
  • Localizing Recent Adaptive Evolution in the Human Genome
    PLoS Genetics, Vol. 3, No. 6. (1 June 2007), e90.
    by Scott H Williamson, Melissa J Hubisz, Andrew G Clark, Bret A Payseur, Carlos D Bustamante, Rasmus Nielsen
    posted to positiveselection by dmc to the group Durbin group on 2008-03-07 11:18:42 as ** along with 7 people and 1 group shoshin brant dpollard madhadron candypmcg emarker iris42 EisenLab
  • Genomic scans for selective sweeps using SNP data.
    Genome Res, Vol. 15, No. 11. (November 2005), pp. 1566-1575.
    by R Nielsen, S Williamson, Y Kim, MJ Hubisz, AG Clark, C Bustamante
    posted to positiveselection by dmc to the group Durbin group on 2008-03-07 11:11:21 as ** along with 4 people and 2 groups stevanspringer balajis ashandanj ramensky Bioinformatics FAB-lab
  • Approaches for identifying targets of positive selection
    Trends in Genetics, Vol. 23, No. 11. (November 2007), pp. 568-577.
    by Jeffrey D Jensen, Alex Wong, Charles F Aquadro
    posted to positiveselection by dmc to the group Durbin group on 2008-03-07 11:10:15 as ** along with 3 people and 1 group dchughes stajich candypmcg EisenLab
  • Progress and prospects in mapping recent selection in the genome
    Heredity, Vol. aop, No. current.
    by KR Thornton, JD Jensen, C Becquet, P Andolfatto
    posted to positiveselection by dmc to the group Durbin group on 2008-03-07 11:08:47 as read along with 1 person candypmcg
  • On the Utility of Linkage Disequilibrium as a Statistic for Identifying Targets of Positive Selection in Nonequilibrium Populations
    Genetics, Vol. 176, No. 4. (1 August 2007), pp. 2371-2379.
    by Jeffrey D Jensen, Kevin R Thornton, Carlos D Bustamante, Charles F Aquadro
    posted to positiveselection by dmc to the group Durbin group on 2008-03-07 11:03:35 as read along with 2 people lp2 ryanraaum
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