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Group: Berkeley Mycology - with tag fungi [73 articles]

Recent papers posted by members of the Berkeley Mycology group with tag fungi
  • Annotation of stress-response proteins in the aspergilli.
    Fungal genetics and biology : FG & B (25 July 2008)
    by Márton Miskei, Zsolt Karányi, István Pócsi
    posted to stress_response fungi aspergillus by stajich to the group Berkeley Mycology on 2008-08-17 20:29:32 as ** along with 1 person GustavoLacerda
  • The evolution of 5S ribosomal RNA genes linked to the rDNA units of fungal species.
    Current genetics (15 August 2008)
    by Julie Bergeron, Guy Drouin
    posted to ribosomal rdna fungi 5s by stajich to the group Berkeley Mycology on 2008-08-17 20:29:01 as ** along with 1 person GustavoLacerda
  • Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective.
    PLoS ONE, Vol. 1 (2006)
    by RH Nilsson, M Ryberg, E Kristiansson, K Abarenkov, KH Larsson, U Kõljalg
    posted to taxonomy fungi database by stajich to the group Berkeley Mycology on 2008-08-16 00:55:03 as ** along with 1 person GustavoLacerda
  • A novel regulator couples sporogenesis and trehalose biogenesis in Aspergillus nidulans.
    PLoS ONE, Vol. 2, No. 10. (2007)
    by M Ni, JH Yu
    posted to sugar spore regulation gene fungi aspergillus by stajich to the group Berkeley Mycology on 2008-08-16 00:50:21 as **
  • Comparative genome analysis of filamentous fungi reveals gene family expansions associated with fungal pathogenesis.
    PLoS ONE, Vol. 3, No. 6. (2008)
    by DM Soanes, I Alam, M Cornell, HM Wong, C Hedeler, NW Paton, M Rattray, SJ Hubbard, SG Oliver, NJ Talbot
    posted to phylogenomics genome fungi comparative_genomics analysis by stajich to the group Berkeley Mycology on 2008-08-16 00:49:43 as ** along with 1 person GustavoLacerda
  • Ecologic niche modeling of Blastomyces dermatitidis in Wisconsin.
    PLoS ONE, Vol. 3, No. 4. (2008)
    by KD Reed, JK Meece, JR Archer, AT Peterson
    posted to fungi environmental_microbiology ecology blastomyces by stajich to the group Berkeley Mycology on 2008-08-16 00:45:59 as **
  • Sexual attraction: on the role of fungal pheromone/receptor systems (A review).
    Acta microbiologica et immunologica Hungarica, Vol. 55, No. 2. (June 2008), pp. 125-143.
    by E Kothe
    posted to signaling receptor pheremone fungi fungal by stajich to the group Berkeley Mycology on 2008-07-21 04:20:07 as **
  • The asexual yeast Candida glabrata maintains distinct a and alpha haploid mating types.
    Eukaryotic cell, Vol. 7, No. 5. (May 2008), pp. 848-858.
    by H Muller, C Hennequin, J Gallaud, B Dujon, C Fairhead
    posted to saccharomyces mating_type mating_genes genome fungi candida by stajich to the group Berkeley Mycology on 2008-07-21 04:14:00 as **
  • Evolution and phylogenetic relationships of APSES proteins from Hemiascomycetes.
    FEMS yeast research, Vol. 8, No. 4. (June 2008), pp. 511-519.
    by B Ramírez-Zavala, A Domínguez
    posted to saccharomyces phylogenetics fungi evolution by stajich to the group Berkeley Mycology on 2008-07-21 04:13:26 as **
  • Exploring contradictory phylogenetic relationships in yeasts.
    FEMS yeast research, Vol. 8, No. 4. (June 2008), pp. 641-650.
    by Q Wu, SA James, IN Roberts, V Moulton, KT Huber
    posted to yeast systematics saccharomyces phylogeny fungi by stajich to the group Berkeley Mycology on 2008-07-21 04:12:58 as **
  • Evolution of SET-domain protein families in the unicellular and multicellular Ascomycota fungi
    BMC Evolutionary Biology, Vol. 8 (01 July 2008), 190.
    by Chendhore S Veerappan, Zoya Avramova, Etsuko N Moriyama
    posted to yeast multicellular fungi filamentous by stajich to the group Berkeley Mycology on 2008-07-09 00:20:23 as **
  • Mycobiota and mycotoxin producing fungi from cocoa beans.
    International journal of food microbiology (2 May 2008)
    by M Sánchez-Hervás, J V V Gil, F Bisbal, D Ramón, P V V Martínez-Culebras
    posted to plantpathogen mycotoxin fungi cocoa by stajich to the group Berkeley Mycology on 2008-06-16 04:07:44 as ** along with 1 person GustavoLacerda
  • Evidence for strong inter- and intracontinental phylogeographic structure in Amanita muscaria, a wind-dispersed ectomycorrhizal basidiomycete.
    Molecular phylogenetics and evolution (29 April 2008)
    by József Geml, Rodham E E Tulloss, Gary A A Laursen, Nina A A Sazanova, D L L Taylor
    posted to population_genetics phylogeography mycorrhizal fungi dispersal amanita by stajich to the group Berkeley Mycology on 2008-06-15 23:42:10 as ** along with 1 person pradiptaray
  • Epigenetic remodeling of the fungal secondary metabolome.
    Organic & biomolecular chemistry, Vol. 6, No. 11. (7 June 2008), pp. 1895-1897.
    by RB Williams, JC Henrikson, AR Hoover, AE Lee, RH Cichewicz
    posted to secondary_metabolite fungi filamentous ascomycota by stajich to the group Berkeley Mycology on 2008-06-13 23:36:52 as ** along with 1 person kengg
  • Complex evolution of the DAL5 transporter family
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Linda Hellborg, Megan Woolfit, Mattias A Hellborg, Jure Piskur
    posted to yeast transporter saccharomyces gene_family gene_duplication fungi ascomycota by stajich to the group Berkeley Mycology on 2008-06-09 05:45:17 as ** along with 1 person neils
  • Development and application of a green fluorescent protein sentinel system for identification of RNA interference in Blastomyces dermatitidis illuminates the role of septin in morphogenesis and sporulation.
    Eukaryotic cell, Vol. 6, No. 8. (August 2007), pp. 1299-1309.
    by T Krajaejun, GM Gauthier, CA Rappleye, TD Sullivan, BS Klein
    posted to septin rnai fungi blastomyces by stajich to the group Berkeley Mycology on 2008-06-09 00:55:09 as **
  • EglD, a putative endoglucanase, with an expansin like domain is localized in the conidial cell wall of Aspergillus nidulans
    Fungal Genetics and Biology, Vol. 45, No. 6. (June 2008), pp. 839-850.
    by Demetra Bouzarelou, Maria Billini, Katerina Roumelioti, Vicky Sophianopoulou
    posted to glucanase glucan fungi development condida beta-glucan aspergillus ascospore by stajich to the group Berkeley Mycology on 2008-06-02 03:50:19 as **
  • A glimpse of lignicolous marine fungi occurring in coastal water bodies of Tamil Nadu (India).
    Comptes rendus biologies, Vol. 331, No. 6. (June 2008), pp. 475-480.
    by GR Nambiar, K Raveendran, Z Changxing, CA Jaleel
    posted to marine fungi by stajich to the group Berkeley Mycology on 2008-06-02 03:34:06 as **
  • Analysis of the proteins involved in the structure and synthesis of the cell wall of Ustilago maydis.
    Fungal genetics and biology : FG & B (24 April 2008)
    by José Ruiz-Herrera, Lucila Ortiz-Castellanos, Ana I I Martínez, Claudia León-Ramírez, Rafael Sentandreu
    posted to ustilago fungi chitin cell_wall cell_surface beta-glucan by stajich to the group Berkeley Mycology on 2008-06-02 03:19:14 as **
  • Revisiting the Saccharomyces cerevisiae predicted ORFeome
    Genome Res. (23 May 2008), gr.076661.108.
    by Qian-Ru Li, Anne-Ruxandra Carvunis, Haiyuan Yu, Jing-Dong J Han, Quan Zhong, Nicolas Simonis, Stanley Tam, Tong Hao, Niels J Klitgord, Denis Dupuy, Danny Mou, Ilan Wapinski, Aviv Regev, David E Hill, Michael E Cusick, Marc Vidal
    posted to yeast saccharomyces molecular_evolution genome_annotation fungi by stajich to the group Berkeley Mycology on 2008-05-28 05:57:18 as ** along with 4 people jyuh biehl nklee dbensasson
  • Existence of a pattern of reproductive character displacement in Homobasidiomycota but not in Ascomycota.
    Journal of evolutionary biology, Vol. 21, No. 3. (May 2008), pp. 761-772.
    by M Le Gac, T Giraud
    posted to speciation fungi basidiomycota ascomycota by stajich to the group Berkeley Mycology on 2008-05-25 20:57:04 as **
  • What can comparative genomics tell us about species concepts in the genus Aspergillus?
    Studies in mycology, Vol. 59 (2007), pp. 11-17.
    by A Rokas, G Payne, ND Fedorova, SE Baker, M Machida, J Yu, DR Georgianna, RA Dean, D Bhatnagar, TE Cleveland, JR Wortman, R Maiti, V Joardar, P Amedeo, DW Denning, WC Nierman
    posted to fungi comparative_genomics aspergillus by stajich to the group Berkeley Mycology on 2008-05-25 20:56:19 as **
  • Sexual and vegetative compatibility genes in the aspergilli.
    Studies in mycology, Vol. 59 (2007), pp. 19-30.
    by K Pál, AD van Diepeningen, J Varga, RF Hoekstra, PS Dyer, AJ Debets
    posted to vegetative_compatibility het_loci fungi aspergillus by stajich to the group Berkeley Mycology on 2008-05-25 20:53:20 as **
  • More than a Repair Enzyme: Aspergillus nidulans photolyase-like CryA Is a Regulator of Sexual Development.
    Molecular biology of the cell (21 May 2008)
    by Ozgür Bayram, Christoph Biesemann, Sven Krappmann, Paul Galland, Gerhard H H Braus
    posted to sexual_development fungi development aspergillus by stajich to the group Berkeley Mycology on 2008-05-25 20:52:00 as **
  • Pheromones are essential for male fertility and sufficient to direct chemotropic polarized growth of trichogynes during mating in Neurospora crassa.
    Eukaryotic cell, Vol. 5, No. 3. (March 2006), pp. 544-554.
    by H Kim, KA Borkovich
    posted to pheremone neurospora mating_genes fungi development by stajich to the group Berkeley Mycology on 2008-05-22 07:20:39 as **
  • A pheromone receptor gene, pre-1, is essential for mating type-specific directional growth and fusion of trichogynes and female fertility in Neurospora crassa.
    Molecular microbiology, Vol. 52, No. 6. (June 2004), pp. 1781-1798.
    by H Kim, KA Borkovich
    posted to pheremone neurospora mating_genes fungi development by stajich to the group Berkeley Mycology on 2008-05-22 07:17:55 as **
  • Comparative hybridization reveals extensive genome variation in the AIDS-associated pathogen Cryptococcus neoformans
    Genome Biology, Vol. 9 (22 February 2008), R41.
    by Guanggan Hu, Iris Liu, Anita Sham, Jason E Stajich, Fred S Dietrich, James W Kronstad
    posted to fungi cryptococcus comparative_genomics cgh by stajich to the group Berkeley Mycology on 2008-05-19 06:48:44 as read
  • The identification of a novel Pleurotus ostreatus dsRNA virus and determination of the distribution of viruses in mushroom spores.
    Journal of microbiology (Seoul, Korea), Vol. 46, No. 1. (February 2008), pp. 95-99.
    by YJ Kim, JY Kim, JH Kim, SM Yoon, YB Yoo, SW Yie
    posted to virus rnaworld rna_silencing fungi dsrna basidiomycota by stajich to the group Berkeley Mycology on 2008-05-19 06:46:31 as **
  • Polarized growth in fungi interplay between the cytoskeleton, positional markers and membrane domains
    Molecular Microbiology, Vol. 68, No. 4. (May 2008), pp. 813-826.
    by Fischer, Reinhard, Zekert, Nadine, Takeshita, Norio
    posted to hyphal_growth growth fungi by stajich to the group Berkeley Mycology on 2008-05-19 06:45:44 as **
  • Transcription Factor Substitution during the Evolution of Fungal Ribosome Regulation
    Molecular Cell, Vol. 29, No. 5. (14 March 2008), pp. 552-562.
    by Herve Hogues, Hugo Lavoie, Adnane Sellam, Maria Mangos, Terry Roemer, Enrico Purisima, Andre Nantel, Malcolm Whiteway
    posted to transcription_factor ribosomes fungi evolution by stajich to the group Berkeley Mycology on 2008-05-05 02:58:14 as ** along with 1 person zwang
  • Towards a molecular understanding of symbiont function: Identification of a fungal gene for the degradation of xylan in the fungus gardens of leaf-cutting ants
    BMC Microbiology, Vol. 8 (28 February 2008), 40.
    by Morten Schioett, Henrik, Lene Lange, Jacobus J Boomsma
    posted to rotting mutalism fungi ant by stajich to the group Berkeley Mycology on 2008-05-05 02:40:00 as **
  • Conservation of divergent transcription in fungi
    Trends in Genetics, Vol. 24, No. 5. (May 2008), pp. 207-211.
    by Philip R Kensche, Martin Oti, Bas E Dutilh, Martijn A Huynen
    posted to transcription fungi evolution divergent_genes by stajich to the group Berkeley Mycology on 2008-04-25 23:37:16 as ** along with 1 person nklee
  • A nuclear receptor-like pathway regulating multidrug resistance in fungi
    Nature, Vol. 452, No. 7187., pp. 604-609.
    by Jitendra K Thakur, Haribabu Arthanari, Fajun Yang, Shih-Jung Pan, Xiaochun Fan, Julia Breger, Dominique P Frueh, Kailash Gulshan, Darrick K Li, Eleftherios Mylonakis, Kevin Struhl, Scott W Moye-Rowley, Brendan P Cormack, Gerhard Wagner, Anders M Näär
    posted to receptor nuclear fungi drug_resistance by stajich to the group Berkeley Mycology on 2008-04-24 18:24:33 as ** along with 1 person mapplab
  • Multigene analysis suggests ecological speciation in the fungal pathogen Claviceps purpurea
    Molecular Ecology, Vol. 17, No. 9. (2008), pp. 2276-2286.
    by GW Douhan, ME Smith, KL Huyrn, A Westbrook, P Beerli, AJ Fisher
    posted to claviceps ecological_speciation fungi by stajich to the group Berkeley Mycology on 2008-04-22 07:11:47 as **
  • The fungus Armillaria bulbosa is among the largest and oldest living organisms
    Nature, Vol. 356, No. 6368. (2 April 1992), pp. 428-431.
    by Myron L Smith, Johann N Bruhn, James B Anderson
    posted to armillaria fungi genotype largest_organism by stajich to the group Berkeley Mycology on 2008-04-13 23:13:48 as **
  • Differences in spontaneous mutation frequencies as a function of environmental stress in soil fungi at "Evolution Canyon," Israel.
    Proceedings of the National Academy of Sciences of the United States of America (9 April 2008)
    by Bernard C C Lamb, Snehal Mandaokar, Basma Bahsoun, Isabella Grishkan, Eviatar Nevo
    posted to fungi mutation_rate soil by stajich to the group Berkeley Mycology on 2008-04-13 21:47:45 as **
  • Large-scale comparative analysis of splicing signals and their corresponding splicing factors in eukaryotes.
    Genome Res, Vol. 18, No. 1. (January 2008), pp. 88-103.
    by S Schwartz, J Silva, D Burstein, T Pupko, E Eyras, G Ast
    posted to eukaryota fungi splicing sr by stajich to the group Berkeley Mycology on 2008-04-10 22:26:19 as ** along with 3 people GustavoLacerda dchughes gjuggler
  • The Evolution of Combinatorial Gene Regulation in Fungi
    PLoS Biology, Vol. 6, No. 2. (1 February 2008), e38.
    by Brian B Tuch, David J Galgoczy, Aaron D Hernday, Hao Li, Alexander D Johnson
    posted to evolution fungi gene_expression regulation by stajich to the group Berkeley Mycology on 2008-04-01 06:43:06 as ** along with 2 people biomcgary cmzmasek
  • Small ncRNA transcriptome analysis from Aspergillus fumigatus suggests a novel mechanism for regulation of protein synthesis
    Nucl. Acids Res. (16 March 2008), gkn123.
    by Christoph Jochl, Mathieu Rederstorff, Jana Hertel, Peter F Stadler, Ivo L Hofacker, Markus Schrettl, Hubertus Haas, Alexander Huttenhofer
    posted to aspergillus fungi gene_silencing noncoding_rna transcriptional_regulation by stajich to the group Berkeley Mycology on 2008-04-01 00:55:02 as ** along with 1 person cellison
  • Intergeneric transfer of ribosomal genes between two fungi
    BMC Evolutionary Biology, Vol. 8 (18 March 2008), 87.
    by Jiatao Xie, Yanping Fu, Daohong Jiang, Guoqing Li, Junbin Huang, Bo Li, Tom Hsiang, Youliang Peng
    posted to fungi horizontal_gene_transfer ribosomal by stajich to the group Berkeley Mycology on 2008-03-25 04:24:41 as **
  • Evidence that RNA silencing functions as an antiviral defense mechanism in fungi
    Proceedings of the National Academy of Sciences, Vol. 104, No. 31. (31 July 2007), pp. 12902-12906.
    by Gert C Segers, Xuemin Zhang, Fuyou Deng, Qihong Sun, Donald L Nuss
    posted to fungi rnai rna_silencing virulence by stajich to the group Berkeley Mycology on 2008-03-17 04:06:11 as **
  • Detection and Identification of Fungi Intimately Associated with the Brown Seaweed Fucus serratus
    Appl. Environ. Microbiol., Vol. 74, No. 4. (15 February 2008), pp. 931-941.
    by Alga Zuccaro, Conrad L Schoch, Joseph W Spatafora, Jan Kohlmeyer, Siegfried Draeger, Julian I Mitchell
    posted to dothideomycete fungi marine by stajich to the group Berkeley Mycology on 2008-03-12 04:08:16 as **
  • Biogeography of Hysterangiales (Phallomycetidae, Basidiomycota).
    Mycol Res (29 June 2007)
    by Kentaro Hosaka, Michael A A Castellano, Joseph W W Spatafora
    posted to basidiomycota biogeography dating divergence_time fungi by stajich to the group Berkeley Mycology on 2008-03-10 19:55:45 as **
  • Structure and duplication of the centrosome
    J Cell Sci, Vol. 120, No. 13. (1 July 2007), pp. 2139-2142.
    by Juliette Azimzadeh, Michel Bornens
    posted to centrosome evolution fungi metazoa by stajich to the group Berkeley Mycology on 2008-03-05 17:59:15 as **
  • Pathogenic fungus harbours endosymbiotic bacteria for toxin production
    Nature, Vol. 437, No. 7060., pp. 884-888.
    by Laila P Partida-Martinez, Christian Hertweck
    posted to bacteria fungi pathogen rhizopus symbiosis by stajich to the group Berkeley Mycology on 2008-03-03 23:44:29 as ** along with 4 people jwortman dayjm robert manzanita
  • Distribution of NRPS gene families within the Neotyphodium/Epichloe complex
    Fungal Genetics and Biology, Vol. 44, No. 11. (November 2007), pp. 1180-1190.
    by Richard Johnson, Christine Voisey, Linda Johnson, Jennifer Pratt, Damien Fleetwood, Anar Khan, Gregory Bryan
    posted to fungi gene_family nrps by stajich to the group Berkeley Mycology on 2008-03-03 22:21:30 as **
  • The Aspergillus nidulans putative kinase, KfsA (kinase for septation), plays a role in septation and is required for efficient asexual spore formation
    Fungal Genetics and Biology, Vol. 44, No. 11. (November 2007), pp. 1205-1214.
    by Norio Takeshita, Kay Vienken, Anne Rolbetzki, Reinhard Fischer
    posted to asexual_development aspergillus fungi by stajich to the group Berkeley Mycology on 2008-03-03 22:18:10 as **
  • Ascus types are phylogenetically misleading in Trapeliaceae and Agyriaceae (Ostropomycetidae, Ascomycota).
    Mycol Res, Vol. 111, No. Pt 9. (September 2007), pp. 1133-1141.
    by HT Lumbsch, I Schmitt, A Mangold, M Wedin
    posted to evolution fungi homoplasy phylogenetics by stajich to the group Berkeley Mycology on 2008-03-03 22:15:30 as **
  • Fungal biodiversity in aquatic habitats
    Biodiversity and Conservation, Vol. 16, No. 1. (13 January 2007), pp. 49-67.
    by Carol Shearer, Enrique Descals, Brigitte Kohlmeyer, Jan Kohlmeyer, Ludmila Marvanová, David Padgett, David Porter, Huzefa Raja, John Schmit, Holly Thorton, Hermann Voglymayr
    posted to aquatic biodiversity chytrid fungi by stajich to the group Berkeley Mycology on 2008-02-23 20:20:26 as **
  • Fungi have three tetraspanin families with distinct functions
    BMC Genomics, Vol. 9 (03 February 2008), 63.
    by Karine Lambou, Didier Tharreau, Annegret Kohler, Catherine Sirven, Melanie Marguerettaz, Crystel Barbisan, Adrienne C Sexton, Ellen M Kellner, Francis Martin, Barbara J Howlett, Marc J Orbach, Marc-Henri Lebrun
    posted to fungi gene_family plantpathogen tetraspannin by stajich to the group Berkeley Mycology on 2008-02-10 23:00:00 as **
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