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Group: Berkeley Mycology - library [430 articles]

Recent papers posted by members of the Berkeley Mycology group
  • PhyloPat: an updated version of the phylogenetic pattern database contains gene neighborhood.
    Nucleic acids research (2 October 2008)
    by Tim Hulsen, Peter M A M Groenen, Jacob de Vlieg, Wynand Alkema
    posted to phylogenetics methods comparative_genomics bioinformatics by stajich to the group Berkeley Mycology on 2008-10-10 20:43:20 as ** along with 1 person nuin
  • Automatically extracting functionally equivalent proteins from SwissProt
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Lisa Mcmillan, Andrew Martin
    posted to genome database data_mining annotation by stajich to the group Berkeley Mycology on 2008-10-09 01:59:43 as ** along with 2 people druvus renatomilani
  • StatAlign: An Extendable Software Package for Joint Bayesian Estimation of Alignments and Evolutionary Trees.
    Bioinformatics (Oxford, England) (27 August 2008)
    by Adám Novák, István Miklós, Rune Lyngsø, Jotun Hein
    posted to phylogeny methods computational_biology alignment by stajich to the group Berkeley Mycology on 2008-10-08 21:40:50 as ** along with 2 people druvus nuin
  • The Putative alpha-1,2-Mannosyltransferase AfMnt1 of the Opportunistic Fungal Pathogen Aspergillus fumigatus Is Required for Cell Wall Stability and Full Virulence
    Eukaryotic Cell, Vol. 7, No. 10. (1 October 2008), pp. 1661-1673.
    by Johannes Wagener, Bernd Echtenacher, Manfred Rohde, Andrea Kotz, Sven Krappmann, Jurgen Heesemann, Frank Ebel
    posted to virulence_factor pathogen fungi cell_wall cell_surface aspergillus by stajich to the group Berkeley Mycology on 2008-10-08 17:58:06 as **
  • Insights into the Evolutionary Origin and Genome Architecture of the Unicellular Opisthokonts Capsaspora owczarzaki and Sphaeroforma arctica
    Journal of Eukaryotic Microbiology, Vol. 53, No. 5. (October 2006), pp. 379-384.
    by Inaki Ruiz-Trillo, Christopher E Lane, John M Archibald, Andrew J Roger
    posted to protist phylogeny phylogenetics multicellular metazoa fungi by stajich to the group Berkeley Mycology on 2008-10-07 22:53:30 as **
  • PhySIC_IST: cleaning source trees to infer more informative supertrees
    BMC Bioinformatics, Vol. 9 (04 October 2008), 413.
    by Celine Scornavacca, Vincent Berry, Vincent Lefort, Emmanuel JP Douzery, Vincent Ranwez
    posted to supertree phylogenetics methods by stajich to the group Berkeley Mycology on 2008-10-06 04:12:19 as ** along with 1 person nuin
  • Bacterial Protection of Beetle-Fungus Mutualism
    Science, Vol. 322, No. 5898. (3 October 2008), 63.
    by Jarrod J Scott, Dong-Chan Oh, Cetin M Yuceer, Kier D Klepzig, Jon Clardy, Cameron R Currie
    posted to symbiosis insect bacteria by stajich to the group Berkeley Mycology on 2008-10-05 22:47:42 as **
  • Fungal cytochrome P450 database
    BMC Genomics, Vol. 9 (28 August 2008), 402.
    by Jongsun Park, Seungmin Lee, Jaeyoung Choi, Kyohun Ahn, Bongsoo Park, Jaejin Park, Seogchan Kang, Yong-Hwan Lee
    posted to p450 fungi database cytochrome by stajich to the group Berkeley Mycology on 2008-10-05 22:41:30 as **
  • Chitin and chitosan from Basidiomycetes.
    International journal of biological macromolecules, Vol. 43, No. 1. (1 July 2008), pp. 8-12.
    by F Di Mario, P Rapanà, U Tomati, E Galli
    posted to sugar enzyme chitosan chitin basidiomycota by stajich to the group Berkeley Mycology on 2008-10-05 22:40:41 as **
  • Gene silencing by RNA Interference in the white rot fungus Phanerochaete chrysosporium.
    Applied and environmental microbiology, Vol. 74, No. 17. (September 2008), pp. 5359-5365.
    by A Matityahu, Y Hadar, CG Dosoretz, PA Belinky
    posted to silencing rnai phanerochaete_chrysosporium gene_expression by stajich to the group Berkeley Mycology on 2008-10-05 22:39:23 as **
  • A Simple Formula for Obtaining Markedly Improved Mutation Rate Estimates
    Genetics (1 October 2008), genetics.108.091777.
    by Philip J Gerrish
    posted to mutation_rate molecular_evolution by stajich to the group Berkeley Mycology on 2008-10-02 06:33:38 as **
  • Geographic and Genetic Population Differentiation of the Amazonian Chocolate Tree (Theobroma cacao L)
    PLoS ONE, Vol. 3, No. 10. (1 October 2008), e3311.
    by Juan C Motamayor, Philippe Lachenaud, da Silva, Rey Loor, David N Kuhn, Steven J Brown, Raymond J Schnell
    posted to population_genetics plant phylogeography genotype ethnobotany domestication chocolate by stajich to the group Berkeley Mycology on 2008-10-02 00:22:28 as **
  • Nested genes and increasing organizational complexity of metazoan genomes.
    Trends in genetics : TIG (5 September 2008)
    by Raquel Assis, Alexey S S Kondrashov, Eugene V V Koonin, Fyodor A A Kondrashov
    posted to multicellular metazoa genome_evolution complexity by stajich to the group Berkeley Mycology on 2008-10-01 22:20:50 as **
  • Widespread conservation of genetic redundancy during a billion years of eukaryotic evolution.
    Trends in genetics : TIG (9 September 2008)
    by Tanya Vavouri, Jennifer I I Semple, Ben Lehner
    posted to genome_evolution gene_duplication evolution duplication by stajich to the group Berkeley Mycology on 2008-10-01 22:20:17 as **
  • Fruiting body and soil rDNA sampling detects complementary assemblage of Agaricomycotina (Basidiomycota, Fungi) in a hemlock-dominated forest plot in southern Ontario
    Molecular Ecology, Vol. 17, No. 13. (July 2008), pp. 3037-3050.
    by Teresita M Porter, Jane E Skillman, Jean-Marc Moncalvo
    posted to rdna fungi ecology basidiomycota by stajich to the group Berkeley Mycology on 2008-09-30 05:37:05 as **
  • Model-based Analysis of ChIP-Seq (MACS)
    Genome Biology, Vol. 9, No. 9. (2008)
    by Yong Zhang, Tao Liu, Clifford Meyer, Jerome Eeckhoute, David Johnson, Bradley Bernstein, Chad Nussbaum, Richard Myers, Myles Brown, Wei Li, Xiaole Liu
    posted to solexa shortread methods computational_biology chipseq bioinformatics binding_site by stajich to the group Berkeley Mycology on 2008-09-26 16:02:11 as ** along with 7 people djkt mdperry fpattyn bcondon idonaldson caseybrown kengg
  • Gene-Boosted Assembly of a Novel Bacterial Genome from Very Short Reads
    PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000186.
    by Steven L Salzberg, Daniel D Sommer, Daniela Puiu, Vincent T Lee
    posted to solexa shortread genome bacteria assembly by stajich to the group Berkeley Mycology on 2008-09-26 16:01:15 as ** along with 5 people and 3 groups druvus vaulot djkt Katje semrich Papers recommended by the Roscoff Plankton Group iSEEM microbiology_nijmegen
  • Sequencing of natural strains of Arabidopsis thaliana with short reads
    Genome Research (September 2008)
    by Stephan Ossowski, Korbinian Schneeberger, Richard M Clark, Christa Lanz, Norman Warthmann, Detlef Weigel
    posted to snp shortread resequencing population_genomics population_genetics arabidopsis by stajich to the group Berkeley Mycology on 2008-09-25 22:18:30 as ** along with 2 people natstreet druvus
  • Crystal structure of opsin in its G-protein-interacting conformation
    Nature, Vol. 455, No. 7212. (2008), pp. 497-502.
    by Patrick Scheerer, Jung H Park, Peter W Hildebrand, Yong J Kim, Norbert Krausz, Hui-Woog Choe, Klaus P Hofmann, Oliver P Ernst
    posted to opsin g-proteins crystalstructure by stajich to the group Berkeley Mycology on 2008-09-25 06:30:24 as ** along with 2 people reyez neils
  • High-throughput, kingdom-wide prediction and annotation of bacterial non-coding RNAs.
    PLoS ONE, Vol. 3, No. 9. (2008)
    by J Livny, H Teonadi, M Livny, MK Waldor
    posted to rna noncoding_rna methods genome_annotation bioinformatics by stajich to the group Berkeley Mycology on 2008-09-25 00:21:43 as ** along with 2 people druvus eskay
  • Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism.
    Proceedings of the National Academy of Sciences of the United States of America (22 September 2008)
    by Charles H H Opperman, David M M Bird, Valerie M M Williamson, Dan S S Rokhsar, Mark Burke, Jonathan Cohn, John Cromer, Steve Diener, Jim Gajan, Steve Graham, T D D Houfek, Qingli Liu, Therese Mitros, Jennifer Schaff, Reenah Schaffer, Elizabeth Scholl, Bryon R R Sosinski, Varghese P P Thomas, Eric Windham
    posted to sequencing sequence_analysis plantpathogen nematode genome annotation by stajich to the group Berkeley Mycology on 2008-09-24 22:50:05 as **
  • Invasive pathogens threaten species recovery programs
    Current Biology, Vol. 18, No. 18. (23 September 2008), pp. R853-R854.
    by Susan F Walker, Jaime Bosch, Timothy Y James, Anastasia P Litvintseva, Juan A Valls, Samuel Piña, Gerardo García, Ghislaine A Rosa, Andrew A Cunningham, Sarah Hole, Richard Griffiths, Matthew C Fisher
    posted to pathogen infectious_disease infection frog chytrid batrachochytrium by stajich to the group Berkeley Mycology on 2008-09-24 20:04:15 as ** along with 750 people and 134 groups frauta jspeer jmetz ejmeij pblanchenay dhbradshaw ecome soeleadership jjrodriguez mederly JLMC sbutterfill rsimitev theshadowhost standara chiayung sannama softsimu vlado CameronNeylon emmackinnon fbr susz mazsx cveres johnabender HugoMarcelo dlobo fernand0 dperkel egh samth sora florine ladygoat hopm hellige parmentierf ssn mortimer tinkha V plaugg ansobol mjaz berthelemy eldan pdlug zephoria carloscabanillas Janos bkliethermes nazareno elsantosneto januadiaboli yaroslavvb jurijmlotman geomblog srl bigga treycausey CSG mcphee chandrashekar denns matzke sherrivokey sona cassj lijil hlovise coolger bigmagpie alicetiara yorgos johannsen cavlec smbrower viller jenmy mlzafron tymmail sedging davidr macowell eimaj42jdp Flit BenWillems agallet hawesie sngourlay jolilius rmagf acer ville garyfeng danifazzio willwade gantlord melanieramage mgregg cwb neteler carneym crispinb rdlong lillekatt davemack agarza carsonr imcdnzl tjimenez Tolik lna dmikurube szityu michmill P2324548 jpbenda Vaccine tadm mkwalker anar grzegorz japple planetoid okarsligil stormybriggs UWerplab nbr inbetweener pafmon stina pgastrein xiruela kutabar jfr xamde kliether mleis jshahin cmunson lfriedl sharonhoward ccots terraces czlamer brent_lance subhradeep jjray Jellyfish cmmorel bayesian benavides ghsalazar manuelpq sekulerlab jmaryott kristina chad_davis Ayest thens RMGraze e2holmes JAShapiro contradictoryben lrodero jamesfournie nybon hawkestein diegolino_veneziano rvosa Schmidtc lyongu ricmilne KarinaFigueroa jfmenudet cdmilligan great_apes brthz juliajumeau gloinf billwolff mrkrause halsnalle pintman yish mkcerusky cyph3r idm smithco ruudvanleeuwen BarrosH aelva harshpshah earnoux princessbritty Laki kupopo ryang eustatic daqing stain matts ram frankgrimes Pfaff9 locatellimp seawidget ianli kate_waxlyrical rherring ThomasEtEckert cliona shaun gregnishihara harmonjt Happybene jklugman mwyarbro rburnett prabakaran nperrin tystl gugek NicolasNeubauer gytisc Nele pedagogicapprentice dlouzeck phillipkent emerson rafamayo arichar6 pasion sadsackmac gbae redcourgette sunilbajpai JJNonesuch heintz BuckeyePhysicist bretblosser charlesijones term madhadron ypeter cmm agraham yijisoo jberro peaksun balabu djsaab crumj garypearce rinelk plashkes PaulB charlescearl p2p-sec langec tuaba os252 JonathanFeinberg jingliu dvoigt hywel tshr dgront isorhiza foistudy jenine donade kmcolo fisherp voiklis insilico fitzgeraldsteele junoda sumeetonweb familydoc craigtalbert dmitri83 dmboyer martint RalphPutnam atsu-kan hlwoodcock reta gogabr smmurphy rafabravo dabhishe JennaW hisashim cjones chuggins Sulpicus ranb alikocho hiromark gane5h l-alex rdiaz pilho ueberweise wangsd echinotrix ak Odi bezbozhnik todchambers perceptron wasteland93 yizheng stephane-jean mahlow mbaric mtr anon_pl dir289 lanubile fcalefato dpeeler QFRMC xwenlong johncumbers kgronemyer keitokita hkl pervane mpennell kedmond mfisk brusilovsky gregflanders hgamboa pgeymueller last5laps jbrown nathanielvirgo rwm101 ChristianGraf marohn davetown101 barbz79it naturecure edgarbc muellerkind fugitive joshuashen aviad_work crusher lucbelanger lauragonzalez Manhal gagliol ashandanj lns cblock trungdong lechristophe ealloza s-adachi rsabouni dhingra corcoted Shii vrv fmiyamae livingthingdan kaz229 Haggan knowlengr aniak krzywy tg Rootfruit ricklillie gracev lrsantos babyone eenauk long pereicoco yeqiwei amcmorl redelings nojhan mkharito rocarvaj stoev tdpessem briansludwig ttsutsumi wenniehu elsiatcase perhapstoopink atbrew fsteeg digitaldust CDivin whshen andersok fpalm brembs ragha mgran thomaswuebben justaubrey macfreek lilalia azygmunt ddineen miguelbezerra jdiggans sjgaller huminfly thjt shenshei erikwdavis jsvoboda ceegrs2 jared jijkoun slafont mdifranc GregorSuhr jmurdoch mattlee jvrantwijk ible fruminator mkowa fellow tzmtzm samjlord abbyworld aozkan giorgis fluomouse Tellima RiccardoAlbertoni annmarie37 ciriol sstoerge gengh goingsomewhere ruddyconsult MichaelGaebler nco71 Vezhnick fabianhemmert shangnan Fahland lossius adriancooke baikanamako elisaformist jsanpedro oceanflynn imaginaryunit bobturner grahamc nascardaughter shariffdinah ibschwartz srfairclough joepickrell bouchard islandrru hohkhkh1 alchemyst mlewcio irwink henriksdal cychang padraic trshepherd tarjeiha josemblazquez pitzelberger hukkinen toppi sjc garancher_gougeon_reyotero nmaisonneuve powell digamberjuwekar cmcleod grieth isys1186 aartaki polyparadigm rodney portalqm bangb cdm jeanfou CareyNadell teh zwang shivakmr prerona michaelmampaey mick39 dagmar bellia kevin7 friveroll khm zetetic karipuf leechuck hp2oo1 jenda_z ngrandy andreacapocci ghunter Maderlock shizhao dayadvham monientiedt rebeccamancy calamar c-gobert baniel jborn dmschneid tale chrisatcite mloewer hanxiansheng rlai jasonbobe ggorjan zeppe AlisonBabeu eprzekwa J_Raff fornstar yodha Akimasa technical oilpalm spacely j0nes TCgroup ingedwar Oktoplus stonest cwr jladell rbmoura Leize adjih carpi omidf2 msampson olaf markusd paulschlesinger qwermish librain pkrrules thehajime PeterRabbit paulvb cvq peefeeyatko kinestetika lynleypage truongducthang metaspencer dodger042 jpassoth krokicki tibbitts brianlimyl vogmae doylem wongmld nkishan hayko gjhuang ashko buggle bemike cvarnam jakobl umurthy21 andregermanoregert Katje tgyork ivanois toivotuo jnz snyder84 idonaldson dandaman awc Thaverkamp mtugrul buchgeher fairy mebiel lectorespa bennettn waszak forestier claudiotubertini acastaner hkreysa AnneB GimpyBee sgclendenon paj prdrieze cortex rschulz aklassen kenneth1ny nschaeff japarejo andreacastelletti schocol hillarpoldmaa kcrawlik ipora yavanna Grobi s-fujii kdesmond bjbecerra ziggy talkingpoints linxiang mllee monkare pantxorama petergun6666 iantunbridge farzanehs mpisarenco blackm0k bluecricket mrosenki eisenmaj BrianTomasik adamsi schulz iup massimocencini natasjadenouden nickpitman genericg dmmarinlo kericson makbot adenkabe ThomasKluge kndiaye duckysherwood scottkb freddan IanBrown squirmelia gkvas hrwiltse mfloris mamadoudiao LTrottier giolakat nikko sarahmccrum jago malkav30 psique Repton gvandyk1 pdessus joni2am taenneken vrich christian_librarian Neeperando ranger midshipman Corbasson murb yungyuc carterb applebyb kaniko skumagai Stepstep abdulpur mirweis nlauzier Axis gi0rgi0ne danzinde christiankissig jsenn tbolt427 Scis0000002 balicea Langster jeanbean EsepBib pulsus-morbi ezaydens melody scarcelan ablam maburkitt fghjorth austin MariaChiaraP wartaalman dconnelly kungcc Gaetan sbaete tanneama000 ricckli boellernadja tkravitz nafets laurabailey iarmac alexispaz pathari steveut wolfe275 dcastro yori amydash rpbharti rwilliamson motchy 6rheology songpku andrealira Zephyrus wilkinm AbnerCYH pchia davidchavalarias GEB CGREL CMU-HCII NU-PRL UoY-CS-AIG Blog_and_Wiki_Research CompetitionLawAndPolicy Tectonics_and_geomorphology NeuronDynamics Context-driven-testers ReadingLab political_science_students kdl distance remote TUCS-ES_Lab Quantum_physics_Education WAND sims_phd_cohort_2005 ASR digital_youth Librarians biodiversity_conservation Global_biodiversity_model InformationRetrieval Wikipedia AssistiveTechnology Bioinformatics mathgamespatterns MACLab folksonomy Neuroscience VisionLab Personal-Information-Management CMS Stoc_Proc_Ecology_WG LanguageAndBrain BrainTheory dtl hdm id vds-arg ALF DPR EvolutionaryComputation STS infovis 2ndFloor fammed-publichealth AI eni Biofluid FAB-lab DSS NeuralNetworks mobilecomputing tmig_psycho RETA SITCRC CDG cliamte_change folk_epistemology instaar_graduate_students Projet_ENSIMAG climate_change BUiGEM social_navigation Macroelectronics ARC04 The_Truants QFRMC_ConsumerCredit Plant-Tissue-Simulation METRIK Metaheuristics Boydian_Society eLearning BioinfoCIPF Nutritional_Polymorphisms CaltechCMP SEGAL Optimization location SNE kickOffTUG-Robocup NanoMechanicsofMetals_MPIMF Georouting Child_Support Software-Architecture ParkinsonLab_at_MaRS moernerlab ilps livingthing HUCO-627-W07 elearning_research PLE-TEL-project Femtochemistry_LMU ediadem ENSSIBVeille memoir ILK ColDyn ImatiGESemantic AGH-IISG PRC_SEA TCD-NDS102-Project CAOS Adaptive-Web Microbial-Ecology Flexible_ICT-supported_learning Social_Software_ws_07-08 DialogueResearchGroup AM-VideoGames-Gender dIEMoSIRIS microbiology_nijmegen Europe_GPE ZnO_project ADMiRes Health_Sciences_Librarians Desgin-by-Contract MITCCI Kopelman_Group DarkMarkGroup VivesMinions PostureMobility compneur Philosophy of physics PsychStatsBanter Video based Animation for People Social Informatics @ IU Global_patent_pools Knowledge_Economy_Reform feminist_technoscience Roswell Cancer Crosstalk Parsons MFA DT 2008 Thesis Research
  • Persistence of the emerging pathogen Batrachochytrium dendrobatidis outside the amphibian host greatly increases the probability of host extinction.
    Proceedings. Biological sciences / The Royal Society, Vol. 275, No. 1632. (7 February 2008), pp. 329-334.
    by KM Mitchell, TS Churcher, TW Garner, MC Fisher
    posted to pathogen batrachochytrium by stajich to the group Berkeley Mycology on 2008-09-24 19:56:44 as **
  • piRNA-mediated nuclear accumulation of retrotransposon transcripts in the Drosophila female germline.
    Proceedings of the National Academy of Sciences of the United States of America (22 September 2008)
    by Séverine Chambeyron, Anna Popkova, Geneviève Payen-Groschêne, Christine Brun, Dorsaf Laouini, Alain Pelisson, Alain Bucheton
    posted to transposable_elements smallrna posttranscriptional pirna gene_regulation by stajich to the group Berkeley Mycology on 2008-09-24 19:56:01 as **
  • The infinite sites model of genome evolution
    Proceedings of the National Academy of Sciences, Vol. 105, No. 38. (2008), pp. 14254-14261.
    by Jian Ma, Aakrosh Ratan, Brian J Raney, Bernard B Suh, Webb Miller, David Haussler
    posted to population_genomics molecular_evolution genomics genome_evolution computational_biology bioinformatics by stajich to the group Berkeley Mycology on 2008-09-24 19:53:28 as ** along with 1 person stringertheory
  • Accelerated evolutionary rates in tropical and oceanic parmelioid lichens (Ascomycota)
    BMC Evolutionary Biology, Vol. 8 (22 September 2008), 257.
    by Thorsten H Lumbsch, Andrew L Hipp, Pradeep K Divakar, Oscar Blanco, Ana Crespo
    posted to sequence_analysis phylogenetics molecular_evolution lichen fungi ascomycota by stajich to the group Berkeley Mycology on 2008-09-23 19:10:00 as **
  • Non-homogeneous models of sequence evolution in the Bio++ suite of libraries and programs
    BMC Evolutionary Biology, Vol. 8 (22 September 2008), 255.
    by Julien Dutheil, Bastien Boussau
    posted to software sequence_analysis library bioinformatics by stajich to the group Berkeley Mycology on 2008-09-23 19:09:15 as ** along with 2 people lptolik druvus
  • Chemotaxis of the amphibian pathogen Batrachochytrium dendrobatidis and its response to a variety of attractants.
    Mycologia, Vol. 100, No. 1. (b 2008), pp. 1-5.
    by AS Moss, NS Reddy, IM Dortaj, MJ San Francisco
    posted to zoospore fungus chytrid chemotaxis batrachochytrium by stajich to the group Berkeley Mycology on 2008-09-22 22:07:56 as **
  • PLINK: a tool set for whole-genome association and population-based linkage analyses.
    American journal of human genetics, Vol. 81, No. 3. (September 2007), pp. 559-575.
    by S Purcell, B Neale, K Todd-Brown, L Thomas, MA Ferreira, D Bender, J Maller, P Sklar, PI de Bakker, MJ Daly, PC Sham
    posted to wga software population_genomics methods linkage bioinformatics by stajich to the group Berkeley Mycology on 2008-09-19 19:17:55 as ** along with 4 people and 2 groups vplagnol misonneh Zephyrus psique Roswell Cancer Crosstalk parkinson's disease references
  • Transcriptomic analysis of the exit from dormancy of Aspergillus fumigatus conidia
    BMC Genomics, Vol. 9 (16 September 2008), 417.
    by Claude Lamarre, Serguei Sokol, Jean-Paul Debeaupuis, Christine Henry, Celine Lacroix, Philippe Glaser, Jean-Yves Coppee, Jean-Marie Francois, Jean-Paul Latge
    posted to transcription gene_expression fungi aspergillus by stajich to the group Berkeley Mycology on 2008-09-17 06:21:42 as **
  • Nested Containment List (NCList): A new algorithm for accelerating interval query of genome alignment and interval databases
    Bioinformatics (18 January 2007), btl647.
    by Alexander V Alekseyenko, Christopher J Lee
    posted to rangequery methods database bioinformatics by stajich to the group Berkeley Mycology on 2008-09-08 22:04:33 as ** along with 1 person dandaman
  • Longer First Introns Are a General Property of Eukaryotic Gene Structure
    PLoS ONE, Vol. 3, No. 8. (2008), e3093.
    by Keith R Bradnam, Ian Korf
    posted to intron_evolution intron genome gene_structure eukarytoa annotation by stajich to the group Berkeley Mycology on 2008-09-07 20:20:31 as ** along with 1 person bpcusack
  • Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training.
    Genome research (29 August 2008)
    by Vardges Ter-Hovhannisyan, Alexandre Lomsadze, Yury O O Chernoff, Mark Borodovsky
    posted to methods genome gene_prediction fungi bioinformatics annotation by stajich to the group Berkeley Mycology on 2008-09-07 20:19:51 as ** along with 1 person bcondon
  • Current topics in genome evolution: Molecular mechanisms of new gene formation
    Cellular and Molecular Life Sciences (CMLS), Vol. 64, No. 5. (14 March 2007), pp. 542-554.
    by D Babushok, E Ostertag, H Kazazian
    posted to molecular_evolution genome_evolution gene duplication alternative_splicing by stajich to the group Berkeley Mycology on 2008-09-03 19:26:42 as ** along with 1 person jandot
  • Intron length increases oscillatory periods of gene expression in animal cells.
    Genes & development (14 August 2008)
    by Ian A A Swinburne, David G G Miguez, Dirk Landgraf, Pamela A A Silver
    posted to regulation intron_evolution intron by stajich to the group Berkeley Mycology on 2008-09-02 19:36:56 as ** along with 1 person brant
  • Mapping short DNA sequencing reads and calling variants using mapping quality scores
    Genome Research
    by Heng Li, J Ruan, R Durbin
    posted to bioinformatics methods nextgensequencing shortread solexa by stajich to the group Berkeley Mycology on 2008-09-01 06:20:33 as ** along with 1 group EisenLab
  • The multiple lives of NMD factors: balancing roles in gene and genome regulation
    Nat Rev Genet, Vol. 9, No. 9. (2008), pp. 699-712.
    by Olaf Isken, Lynne E Maquat
    posted to gene nmd posttranscriptional regulation by stajich to the group Berkeley Mycology on 2008-08-19 17:51:09 as ** along with 2 people dakelley bpcusack
  • Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges
    Nat Rev Genet, Vol. 9, No. 9. (2008), pp. 678-688.
    by Lincoln D Stein
    posted to bioinformatics database genome informatics infrastructure by stajich to the group Berkeley Mycology on 2008-08-19 16:25:02 as ** along with 20 people and 3 groups nuin rdiaz bmaust jyuh carolh12 ilya alaninmcr druvus srp33 dullhunk tharris mrochman dansullivanblk neils jandot GustavoLacerda jago fgibson thomaskelder sjcockell Global_health_enterprise_architecture Knowledge_Economy_Reform kpa-resources
  • Differential gene expression between the biotrophic-like and saprotrophic mycelia of the witches' broom pathogen Moniliophthora perniciosa.
    Molecular plant-microbe interactions : MPMI, Vol. 21, No. 7. (July 2008), pp. 891-908.
    by J Rincones, LM Scarpari, MF Carazzolle, JM