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Group: OPIG - library [13 articles]

Recent papers posted by members of the OPIG group
  • Unraveling Protein Networks with Power Graph Analysis
    PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000108.
    by Loïc Royer, Matthias Reimann, Bill Andreopoulos, Michael Schroeder
  • High-resolution structure prediction and the crystallographic phase problem
    Nature (14 October 2007)
    by Bin Qian, Srivatsan Raman, Rhiju Das, Philip Bradley, Airlie J Mccoy, Randy J Read, David Baker
  • A map of human protein interactions derived from co-expression of human mRNAs and their orthologs
    Mol Syst Biol, Vol. 4 (15 April 2008)
    by Arun K Ramani, Zhihua Li, Traver G Hart, Mark W Carlson, Daniel R Boutz, Edward M Marcotte
  • Eigenvalue analysis of amino acid substitution matrices reveals a sharp transition of the mode of sequence conservation in proteins.
    Bioinformatics, Vol. 20, No. 16. (1 November 2004), pp. 2504-2508.
    by AR Kinjo, K Nishikawa
    posted to protein sequence substitution by sebk to the group OPIG on 2008-03-13 17:45:35 as read
  • A systems biology approach for pathway level analysis
    Genome Res. (4 September 2007), gr.6202607.
    by Sorin Draghici, Purvesh Khatri, Adi L Tarca, Kashyap Amin, Arina Done, Calin Voichita, Constantin Georgescu, Roberto Romero
  • Exploring Biological Network Structure Using Exponential Random Graph Models.
    Bioinformatics (20 July 2007)
    by Zachary M M Saul, Vladimir Filkov
  • The protein network of bacterial motility
    Mol Syst Biol, Vol. 3 (31 July 2007)
    by Seesandra V Rajagopala, Bjorn Titz, Johannes Goll, Jodi R Parrish, Katrin Wohlbold, Matthew T Mckevitt, Timothy Palzkill, Hirotada Mori, Russell L Finley, Peter Uetz
  • FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties.
    J Mol Biol, Vol. 310, No. 1. (29 June 2001), pp. 243-257.
    by J Shi, TL Blundell, K Mizuguchi
  • Comparing Protein Interaction Networks via a Graph Match-and-Split Algorithm
    Journal of Computational Biology, Vol. 14, No. 7. (2007), pp. 892-907.
    by Manikandan Narayanan, Richard M Karp
    posted to algorithm biological comparison functional graph-matching modules network by waqar to the group OPIG on 2007-11-25 20:58:38 as ****
  • Relating three-dimensional structures to protein networks provides evolutionary insights.
    Science, Vol. 314, No. 5807. (December 2006), pp. 1938-1941.
    by PM Kim, LJ Lu, Y Xia, MB Gerstein
    posted to interaction binding evolution hub by Pao-Yang to the group OPIG on 2007-11-24 17:35:28 as **
  • A molecular model for the origin of protein translation in an RNA world.
    J Theor Biol, Vol. 243, No. 3. (7 December 2006), pp. 393-406.
    by WR Taylor
    posted to fold rna by cdeane to the group OPIG on 2007-11-23 16:38:52 as **
  • Loop modeling: sampling, filtering, and scoring.
    Proteins (29 August 2007)
    by Cinque S S Soto, Marc Fasnacht, Jiang Zhu, Lucy Forrest, Barry Honig
    posted to loop model by cdeane to the group OPIG on 2007-11-23 16:37:56 as ** along with 1 person granujilla
  • A model study of protein nascent chain and cotranslational folding using hydrophobic-polar residues.
    Proteins (6 August 2007)
    by Hsiao-Mei M Lu, Jie Liang
    posted to 2d co-translation 3d folding hp model protein by saunders to the group OPIG on 2007-11-22 15:50:08 as ***** along with 1 person cdeane
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