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Group: dbmi-nlp - library [79 articles]

Recent papers posted by members of the dbmi-nlp group
  • Association of genes to genetically inherited diseases using data mining
    Nature Genetics, Vol. 31 (2002)
    by Carolina Perez-Iratxeta, Peer Bork, Miguel A Andrade
    posted to relation-extraction co-occurrence biomedical by henk-cul to the group dbmi-nlp on 2008-07-24 16:15:40 as **
  • Using literature-based discovery to identify disease candidate genes
    International Journal of Medical Informatics, Vol. 74 (2005)
    by Dimitar Hristovskia, Borut Peterlin, Joyce A Mitchell, Susanne M Humphrey
    posted to relation-extraction co-occurrence biomedical by henk-cul to the group dbmi-nlp on 2008-07-24 16:12:11 as **
  • Frontiers of biomedical text mining: current progress
    Briefings in Bioinformatics (2007)
    by Pierre Zweigenbaum, Dina Demner-Fushman, Hong Yu, Kevin B Cohen
    posted to review biomedical by henk-cul to the group dbmi-nlp on 2008-07-24 15:45:15 as read
  • On Textual Documents Classification Using Fourier Domain Scoring
    posted to text machine learning classification by saeed2 to the group dbmi-nlp on 2008-07-21 18:15:49 as read along with 1 person henk-cul
  • A new text mining approach for finding protein-to-disease associations
    Am J Biochem Biotechnol, No. 1. (2005)
    by H Al-Mubaid, RK Singh
    posted to relation-extraction co-occurrence bionlp biomedical by henk-cul to the group dbmi-nlp on 2008-07-16 21:55:06 as **
  • A literature based method for identifying gene-disease connections
    by LA Adamic
    posted to relation-extraction co-occurrence bionlp biomedical by henk-cul to the group dbmi-nlp on 2008-07-16 21:52:58 as ***
  • Weakly Supervised Learning for Hedge Classification in Scientific Literature
    by Ben Medlock, Ted Briscoe
    posted to contextual-features biomedical by henk-cul to the group dbmi-nlp on 2008-07-14 16:19:25 as **
  • Using Neutral Examples for Learning Polarity
    by Moshe Koppel, Jonathan Schler
    posted to polarity contextual-features by henk-cul to the group dbmi-nlp on 2008-07-14 16:06:21 as **
  • Hedge Classification in Biomedical Texts with a Weakly Supervised Selection of Keywords
    by Gyorgy Szarvas
    posted to machine-learning contextual-features by henk-cul to the group dbmi-nlp on 2008-07-09 19:51:10 as **
  • An Entity-Mention Model for Coreference Resolution with Inductive Logic Programming
    (June 2008), pp. 843-851.
    by Xiaofeng Yang, Jian Su, Jun Lang, Chew L Tan, Ting Liu, Sheng Li
    posted to inductive_logic_programming coreference by wchapman to the group dbmi-nlp on 2008-06-24 18:56:15 as **** along with 1 person and 1 group henk-cul Coreference Resolution
  • Natural Language Processing and Temporal Information Extraction in Emergency Department Triage Notes.
    (2008)
    by A Irvine, S Haas
    posted to temporal nlp by wchapman to the group dbmi-nlp on 2008-05-15 21:51:23 as **
  • An Empirical Approach to Conceptual Case Frame Acquisition
    by Ellen Riloff, Mark Schmelzenbach
    posted to information-extraction case-frame autoslog by lmc61 to the group dbmi-nlp on 2008-05-06 19:37:13 as *** along with 1 person henk-cul
  • DNA, diseases and databases: disastrously deficient
    Trends in Genetics, Vol. 21, No. 6. (June 2005), pp. 333-338.
    by George P Patrinos, Anthony J Brookes
    posted to publishing policies funding data-sharing data-reuse databases all by hpiwowar to the group dbmi-nlp on 2008-05-03 19:12:01 as ** along with 1 person Nilza
  • Automatic Classification of Foot Examination Findings Using Clinical Notes and Machine Learning
    J Am Med Inform Assoc, Vol. 15, No. 2. (1 March 2008), pp. 198-202.
    by Serguei V Pakhomov, Penny L Hanson, Susan S Bjornsen, Steven A Smith
    posted to nlp by jeannie27 to the group dbmi-nlp on 2008-04-15 22:40:40 as *** along with 1 person henk-cul
  • Evaluation of Coreferences and Coreference Resolution Systems
    (1998)
    by B Amit
    posted to annotation coreference by wchapman to the group dbmi-nlp on 2008-04-14 19:56:36 as ****
  • Neurolinguistic Approach to Natural Language Processing with Applications to Medical Text Analysis
    Neurolinguistics (2008), in press.
    by J Pestian
    posted to neurolinguistics nlp semantic_network by wchapman to the group dbmi-nlp on 2008-04-10 16:00:05 as **** along with 1 person henk-cul
  • Coreference Resolution: A Survey
    posted to coreference by wchapman to the group dbmi-nlp on 2008-04-04 22:45:17 as read
  • Discourse Processing for Scientific Papers
    (2007)
    by Simone Teufel
    posted to all citation-classification cues discourse nlp by hpiwowar to the group dbmi-nlp on 2008-03-18 16:52:43 as ** along with 1 person henk-cul
  • Empirical data on corpus design and usage in biomedical natural language processing.
    AMIA Annu Symp Proc (2005), pp. 156-160.
    by KB Cohen, L Fox, PV Ogren, L Hunter
    posted to all biomedical-literature corpra data-reusability evaluation nlp reuse by hpiwowar to the group dbmi-nlp on 2008-03-18 15:35:21 as read along with 3 people and 1 group helliontroy lynnefox balex biomedical-nlp
  • Rapid pattern development for concept recognition systems: application to point mutations.
    J Bioinform Comput Biol, Vol. 5, No. 6. (December 2007), pp. 1233-1259.
    by JG Caporaso, WA Baumgartner, DA Randolph, KB Cohen, L Hunter
    posted to all biomedical-literature concept-recognition corpus-construction full-text information-extraction nlp pattern-learning text-mining by hpiwowar to the group dbmi-nlp on 2008-03-18 15:30:05 as ***
  • A simple algorithm for identifying negated findings and diseases in discharge summaries.
    J Biomed Inform, Vol. 34, No. 5. (October 2001), pp. 301-310.
    by WW Chapman, W Bridewell, P Hanbury, GF Cooper, BG Buchanan
    posted to all nlp by hpiwowar to the group dbmi-nlp on 2008-03-11 13:02:28 as ** along with 3 people and 1 group route145 kkaiser farzanehs IEG
  • The CLEF Corpus: Semantic Annotation of Clinical Text
    (November 2007), pp. 625-629.
    by A Roberts, R Gaizauskas, M Hepple, N Davis, G Demetriou, Y Guo, J Kola, I Roberts, A Setzer, A Tapuria, B Wheeldin
    edited by JM Teich, J Suermondt, G Hripcsak
    posted to annotation medical nlp by henk-cul to the group dbmi-nlp on 2008-03-10 15:37:50 as **
  • Exploring hedge identification in biomedical literature.
    J Biomed Inform (11 January 2008)
    by Ben Medlock
    posted to nlp by hpiwowar to the group dbmi-nlp on 2008-03-06 23:33:54 as ** along with 1 person dullhunk
  • NLTK: The Natural Language Toolkit
    (17 May 2002)
    by Edward Loper, Steven Bird
    posted to all nlp nltk prefered-tool-reference tools by hpiwowar to the group dbmi-nlp on 2008-03-03 16:01:00 as **
  • Data Mining: Practical Machine Learning Tools and Techniques with Java Implementations
    (11 October 1999)
    by Ian H Witten, Eibe Frank
    posted to all machine-learning nlp prefered-tool-reference tools weka by hpiwowar to the group dbmi-nlp on 2008-03-03 15:54:10 as ** along with 15 people and 3 groups derek_farn sb-3000 ujh aalibes ChaTo 4vgacias ergodique gboleda pailun caomo donade roland_ewald girschick wkiri dquercia AI dIEMoSIRIS MoSi-Rostock
  • Supporting CSCL with automatic corpus analysis technology
    (2005), pp. 125-134.
    by Pinar Dönmez, Carolyn Rosé, Karsten Stegmann, Armin Weinberger, Frank Fischer
    posted to all nlp text-categorization tools weka by hpiwowar to the group dbmi-nlp on 2008-03-03 15:48:57 as **
  • Getting Started in Text Mining
    PLoS Computational Biology, Vol. 4, No. 1. (1 January 2008), e20.
    by Bretonnel K Cohen, Lawrence Hunter
    posted to literature nlp textmining by wchapman to the group dbmi-nlp on 2008-02-25 18:38:30 as read along with 13 people jfr quianominorleo TheresaNiederberger ulmer jyuh y4su0 yas dullhunk hpiwowar sebastien_vigneau shigepong cjeans sci91078
  • Speech segmentation and its impact on spoken document processing
    Signal Processing Magazine (2008), in press.
    by M Ostendorf, B Favre, D Grishman, M Hakkani-Tur, M Harper, D Hillard, J Hirschberg, H Ji, JG Kahn, Y Liu, S Maskey, E Matusov, H Ney, A Rosenberg, E Shriberg, W Wang, C Wooters
    posted to ie punctuation speech_recognition by wchapman to the group dbmi-nlp on 2008-02-18 19:49:06 as **
  • The efficacy of diagnostic imaging
    Med Decis Making, Vol. 11, No. 2. (1991), pp. 88-94.
    by DG Fryback, JR Thornbury
    posted to evaluation by wchapman to the group dbmi-nlp on 2008-02-18 16:49:48 as read
  • Annotation of anaphoric relations in biomedical full-text articles using a domain-relevant scheme
    Proceedings of DAARC (2007), pp. 19-24.
    by C Gasperin, N Karamanis, R Seal
    posted to annotation coreference by wchapman to the group dbmi-nlp on 2008-02-18 16:45:57 as **
  • Punctuating speech for information extraction
    Proc. of IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP) (2008)
    by B Favre, R Girshman, D Hillard, Heng Ji, D Hakkani-Tur, M Ostendorf
    posted to ie punctuation speech_recognition by wchapman to the group dbmi-nlp on 2008-02-18 15:29:19 as ***
  • Domain Adaptation with Structural Correspondence Learning
    (July 2006), pp. 120-128.
    by John Blitzer, Ryan Mcdonald, Fernando Pereira
    posted to adaptation nll parsing by student_t to the group dbmi-nlp on 2008-02-14 19:29:36 as **** along with 1 person vlachmore
  • Building Domain-Specific Taggers without Annotated (Domain) Data
    pp. 1103-1111.
    by John Miller, Manabu Torii, Vijay K Shanker
    posted to adaptation annotations pos by student_t to the group dbmi-nlp on 2008-02-14 19:10:07 as **
  • Modeling electronic discharge summaries as a simple temporal constraint satisfaction problem
    Journal of the American Medical Informatics Association, Vol. Volume 12, No. Issue 1. (January 2005), pp. 55-63.
    by George Hripcsak, Li Zhou, Simon Parsons, Amar K Das, Stephen B Johnson
    posted to modeling by Belle1 to the group dbmi-nlp on 2008-02-14 16:15:33 as **
  • A temporal constraint structure for extracting temporal information from clinical narrative.
    J Biomed Inform (15 September 2005)
    by Li Zhou, Genevieve B B Melton, Simon Parsons, George Hripcsak
    posted to medical nlp temporal-modeling by henk-cul to the group dbmi-nlp on 2008-02-06 16:31:41 as read along with 1 person fwehbe
  • New directions in biomedical text annotation: definitions, guidelines and corpus construction
    BMC Bioinformatics, Vol. 7 (25 July 2006), 356.
    by John W Wilbur, Andrey Rzhetsky, Hagit Shatkay
    posted to annotation literature by wchapman to the group dbmi-nlp on 2008-02-06 04:24:12 as **** along with 4 people and 1 group fisherp helliontroy jacky957 balex biomedical-nlp
  • RelEx - relation extraction using dependency parse trees.
    Bioinformatics (1 December 2006)
    by Katrin Fundel, Robert Küffner, Ralf Zimmer
    posted to all information-extraction literature nlp relationship-extraction by hpiwowar to the group dbmi-nlp on 2008-01-29 01:04:21 as *** along with 3 people and 1 group jyuh yas tkmosk T_lab
  • Tagging Sentence Boundaries in Biomedical Literature
    Computational Linguistics and Intelligent Text Processing (2007), pp. 186-195.
    by Weijian Xuan, Stanley Watson, Fan Meng
    posted to all literature nlp tools by hpiwowar to the group dbmi-nlp on 2008-01-28 16:59:07 as ***
  • MedPost: a part-of-speech tagger for bioMedical text.
    Bioinformatics, Vol. 20, No. 14. (22 September 2004), pp. 2320-2321.
    by L Smith, T Rindflesch, WJ Wilbur
    posted to all literature nlp pos-tagging by hpiwowar to the group dbmi-nlp on 2008-01-28 16:58:16 as *** along with 5 people and 3 groups TheresaNiederberger irenas yas kkaiser vlachmore dbk-lab T_lab IEG
  • Frontiers of biomedical text mining: current progress
    Brief Bioinform (30 October 2007), bbm045.
    by Pierre Zweigenbaum, Dina Demner-Fushman, Hong Yu, Kevin B Cohen
    posted to literature nlp textmining by wchapman to the group dbmi-nlp on 2008-01-25 18:29:08 as ** along with 7 people irenas TheresaNiederberger yggdrasil jyuh yas dullhunk hpiwowar
  • Biomedical ontologies: a functional perspective
    Brief Bioinform, Vol. 9, No. 1. (1 January 2008), pp. 75-90.
    by Daniel L Rubin, Nigam H Shah, Natalya F Noy
    posted to ontologoies by wchapman to the group dbmi-nlp on 2008-01-23 15:05:30 as *** along with 6 people sgoetz dansullivanblk jyuh jfr dullhunk RockHI
  • Collection of Cancer Stage Data by Classifying Free-text Medical Reports
    J Am Med Inform Assoc, Vol. 14, No. 6. (1 November 2007), pp. 736-745.
    by Iain A Mccowan, Darren C Moore, Anthony N Nguyen, Rayleen V Bowman, Belinda E Clarke, Edwina E Duhig, Mary-Jane Fry
    posted to cancer nlp by sek55 to the group dbmi-nlp on 2008-01-17 21:50:02 as **
  • Using Electronic Medical Records to Enhance Detection and Reporting of Vaccine Adverse Events
    J Am Med Inform Assoc, Vol. 14, No. 6. (1 November 2007), pp. 731-735.
    by Virginia L Hinrichsen, Benjamin Kruskal, Megan A O'Brien, Tracy A Lieu, Richard Platt, Vaccine
    posted to nlp by sek55 to the group dbmi-nlp on 2008-01-17 21:48:58 as **
  • The Evaluation of a Temporal Reasoning System in Processing Clinical Discharge Summaries
    J Am Med Inform Assoc, Vol. 15, No. 1. (1 January 2008), pp. 99-106.
    by Li Zhou, Simon Parsons, George Hripcsak
    posted to nlp time by sek55 to the group dbmi-nlp on 2008-01-17 21:43:47 as ** along with 1 person henk-cul
  • An Electronic Health Record Based on Structured Narrative
    J Am Med Inform Assoc, Vol. 15, No. 1. (1 January 2008), pp. 54-64.
    by Stephen B Johnson, Suzanne Bakken, Daniel Dine, Sookyung Hyun, Eneida Mendonca, Frances Morrison, Tiffani Bright, Tielman Van Vleck, Jesse Wrenn, Peter Stetson
    posted to clinical nlp by sek55 to the group dbmi-nlp on 2008-01-17 21:40:24 as **
  • Medical i2b2 NLP Smoking Challenge: The A-Life System Architecture and Methodology
    J Am Med Inform Assoc, Vol. 15, No. 1. (1 January 2008), pp. 40-43.
    by Daniel T Heinze, Mark L Morsch, Brian C Potter, Ronald E Sheffer
    posted to nlp by sek55 to the group dbmi-nlp on 2008-01-17 21:39:22 as **
  • Identifying Smokers with a Medical Extraction System
    J Am Med Inform Assoc, Vol. 15, No. 1. (1 January 2008), pp. 36-39.
    by Cheryl Clark, Kathleen Good, Lesley Jezierny, Melissa Macpherson, Brian Wilson, Urszula Chajewska
    posted to nlp by sek55 to the group dbmi-nlp on 2008-01-17 21:38:29 as **
  • Five-way Smoking Status Classification Using Text Hot-Spot Identification and Error-correcting Output Codes
    J Am Med Inform Assoc, Vol. 15, No. 1. (1 January 2008), pp. 32-35.
    by Aaron M Cohen
    posted to nlp by sek55 to the group dbmi-nlp on 2008-01-17 21:37:33 as **
  • Using Implicit Information to Identify Smoking Status in Smoke-blind Medical Discharge Summaries
    J Am Med Inform Assoc, Vol. 15, No. 1. (1 January 2008), pp. 29-31.
    by Richard Wicentowski, Matthew R Sydes
    posted to nlp by sek55 to the group dbmi-nlp on 2008-01-17 21:36:00 as **
  • Mayo Clinic NLP System for Patient Smoking Status Identification
    J Am Med Inform Assoc, Vol. 15, No. 1. (1 January 2008), pp. 25-28.
    by Guergana K Savova, Philip V Ogren, Patrick H Duffy, James D Buntrock, Christopher G Chute
    posted to nlp by sek55 to the group dbmi-nlp on 2008-01-17 21:34:31 as ** along with 1 person hpiwowar
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