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Group: ic4 - library [93 articles]

Recent papers posted by members of the ic4 group
  • Growing Bayesian network models of gene networks from seed genes.
    Bioinformatics, Vol. 21 Suppl 2 (1 September 2005)
    by JM Peña, J Björkegren, J Tegnér
    posted to bayesian_network gene_expression genetic_network graphical_models machine_learning microarray regulatory_network structure_learning systems_biology by naegele to the group ic4 on 2007-10-19 15:44:48 as ** along with 5 people abhik imouthesmp wnpx ramakris heliopais
  • Bayesian Substructure Learning - Approximate Learning of Very Large Network Structures
    (September 2007)
    by Andreas Nägele, Mathäus Dejori, Martin Stetter
    edited by Dunja Mladenič, Andrzej Skowron
    posted to structure_learning own_publication graphical_model by dejori to the group ic4 on 2007-09-06 12:45:54 as ** along with 2 people and 1 group rsantana naegele generif_paper
  • Resource Description Framework
    posted to rdf by dejori to the group ic4 on 2007-09-06 12:07:20 as ** along with 1 group generif_paper
  • GeneSim\texttrademark: Intelligent IT Platform for the Biomedical World
    (October 2007)
    by Martin Stetter, Andreas Nägele, Mathäus Dejori
    edited by Alfons Schuster
    posted to own_publication graphical_model by dejori to the group ic4 on 2007-09-06 10:30:16 as ** along with 1 person and 1 group naegele generif_paper
  • A novel algorithm for scalable and accurate Bayesian network learning.
    Medinfo, Vol. 11, No. Pt 1. (2004), pp. 711-715.
    by LE Brown, I Tsamardinos, CF Aliferis
    posted to structure_learning machine_learning graphical_models bayesian_network by naegele to the group ic4 on 2007-09-06 10:26:16 as read along with 2 people and 1 group gangli ramakris tulip
  • Automatic recognition of topic-classified relations between prostate cancer and genes using MEDLINE abstracts.
    BMC Bioinformatics, Vol. 7 Suppl 3 (2006)
    by HW Chun, Y Tsuruoka, JD Kim, R Shiba, N Nagata, T Hishiki, J Tsujii
    posted to text_mining rdc by dejori to the group ic4 on 2007-09-05 14:33:23 as ** along with 1 person and 1 group bundschu generif_paper
  • Biomarkers and surrogate endpoints: Preferred definitions and conceptual framework*
    Clin Pharmacol Ther, Vol. 69, No. 3. (March 2001), pp. 89-95.
    by Arthur J Atkinson, Wayne A Colburn, Victor G Degruttola, David L Demets, Gregory J Downing, Daniel F Hoth, John A Oates, Carl C Peck, Robert T Schooley, Bert A Spilker, Janet Woodcock, Scott L Zeger
    posted to diagnostics biomarker by dejori to the group ic4 on 2007-09-05 13:30:13 as ** along with 1 person and 1 group bundschu generif_paper
  • Biomarkers and surrogate end points for fit-for-purpose development and regulatory evaluation of new drugs.
    Clin Pharmacol Ther, Vol. 81, No. 1. (January 2007), pp. 104-107.
    by JA Wagner, SA Williams, CJ Webster
    posted to diagnostics biomarker by dejori to the group ic4 on 2007-09-05 13:28:05 as ** along with 1 person and 1 group jyuh generif_paper
  • Translation research: from accurate diagnosis to appropriate treatment
    Journal of Translational Medicine, Vol. 2, No. 1. (2004)
    by Craig Webb, Harvey Pass
    posted to diagnostics by dejori to the group ic4 on 2007-09-05 13:14:40 as ** along with 1 person and 1 group HugoMarcelo generif_paper
  • A text-mining analysis of the human phenome
    European Journal of Human Genetics, Vol. aop, No. current.
    by Marc A van Driel, Jorn Bruggeman, Gert Vriend, Han G Brunner, Jack AM Leunissen,
    posted to text_mining omim network disease by dejori to the group ic4 on 2007-09-05 13:10:30 as ** along with 2 people and 2 groups jyuh yas T_lab generif_paper
  • Hunting drug targets by systems-level modeling of gene expression profiles.
    IEEE Trans Nanobioscience, Vol. 3, No. 3. (September 2004), pp. 180-191.
    by M Dejori, B Schuermann, M Stetter
    posted to structure_learning own_publication microarray graphical_model by dejori to the group ic4 on 2007-09-05 12:22:39 as ** along with 1 group generif_paper
  • Mining functional modules in genetic networks with decomposable graphical models.
    OMICS, Vol. 8, No. 2. (2004), pp. 176-188.
    by M Dejori, A Schwaighofer, V Tresp, M Stetter
    posted to structure_learning own_publication microarray graphical_model by dejori to the group ic4 on 2007-09-05 12:21:55 as ** along with 2 people and 1 group DavidEdwards rsantana generif_paper
  • From molecular to modular cell biology.
    Nature, Vol. 402, No. 6761 Suppl. (2 December 1999)
    by LH Hartwell, JJ Hopfield, S Leibler, AW Murray
    posted to topology systems_biology by dejori to the group ic4 on 2007-09-05 12:04:28 as ** along with 16 people and 7 groups dragonrez carlk awooga tvdbulck vsausg rhem1224 balajis nuke2005 rubendrr wnpx i41m adepace javierFellow mmt mirzazadeh carmaus EisenLab TCR_Signaling cytoskeleton-and-afm SysbioMPI-TCells dIEMoSIRIS generif_paper MoSi-Rostock
  • Classes of small-world networks.
    Proc Natl Acad Sci U S A, Vol. 97, No. 21. (10 October 2000), pp. 11149-11152.
    by LA Amaral, A Scala, M Barthelemy, HE Stanley
    posted to topology systems_biology scale_free network by dejori to the group ic4 on 2007-09-05 11:59:05 as ** along with 22 people and 10 groups Borelli Diego_Prada subhacom camster KAllendoerfer xxc zqshen ChaTo yoh cristinaalp mmt kubyaddi muraken mattjb RafG jaspervoskuilen PaulBHartzog yidao mylit JimFolk Evangelia stefanoallesina dbk-lab Blog_and_Wiki_Research GraphVis Wikipedia ETEC533 ComplexAdaptiveSystems DSTO-CAS generif_paper CSU_School_of_Education Web2-0_Education
  • Understanding diseases by mouse click: the promise and potential of computational approaches in Systems Biology
    Clinical & Experimental Immunology, Vol. 149, No. 3. (September 2007), pp. 424-429.
    by Klauschen, , Angermann, , Meier-Schellersheim,
    posted to systems_biology by dejori to the group ic4 on 2007-09-05 11:57:12 as ** along with 1 person and 1 group maburkitt generif_paper
  • Interactome: gateway into systems biology.
    Hum Mol Genet, Vol. 14 Spec No. 2 (15 October 2005)
    by ME Cusick, N Klitgord, M Vidal, DE Hill
    posted to systems_biology by dejori to the group ic4 on 2007-09-05 11:53:04 as ** along with 8 people and 1 group kuhn maryee wnpx gandhih jdiggans braingrind grahamc wilbur generif_paper
  • On the Consistency of Multiclass Classification Methods
    Journal of Machine Learning Research, Vol. 8 (May 2007), pp. 1007-1025.
    by Ambuj Tewari, Peter L Bartlett
    posted to multiclass classification by naegele to the group ic4 on 2007-09-04 08:55:15 as ***
  • "Ideal Parent" Structure Learning for Continuous Variable Bayesian Networks
    Journal of Machine Learning Research, Vol. 8 (August 2007), pp. 1799-1833.
    by Gal Elidan, Iftach Nachman, Nir Friedman
    posted to structure_learning machine_learning graphical_models continous_variables bayesian_network by naegele to the group ic4 on 2007-09-04 08:36:58 as **** along with 1 person tdanford
  • Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data
    BMC Bioinformatics, Vol. 8 (03 August 2007), 283.
    by Xiangdong Liu, Walter J Jessen, Siva Sivaganesan, Bruce J Aronow, Mario Medvedovic
    posted to systems_biology regulatory_network gene_expression chip_chip bayesian by naegele to the group ic4 on 2007-09-04 08:24:10 as ** along with 2 people dquest nklee
  • Genetic reconstruction of a functional transcriptional regulatory network.
    Nat Genet (8 April 2007)
    by Zhanzhi Hu, Patrick J J Killion, Vishwanath R R Iyer
    posted to systems_biology by dejori to the group ic4 on 2007-09-04 07:30:32 as ** along with 10 people and 5 groups siebert mapplab czeller dpollard xico nickluscombe zwang lizabeth xingxu naegele Bioinformatics EisenLab WetBiology EBI-regulation generif_paper
  • Characterization of protein interaction networks in tumors
    BMC Bioinformatics, Vol. 8 (27 June 2007), 224.
    by Alexander Platzer, Paul Perco, Arno Lukas, Bernd Mayer
    posted to systems_biology by dejori to the group ic4 on 2007-09-03 16:58:24 as ** along with 1 group generif_paper
  • An Introduction to the Bootstrap
    (1993)
    by B Efron, RJ Tibshirani
    posted to bibtex-import by naegele to the group ic4 on 2007-09-03 16:53:17 as read
  • Pearson's chi-square test
    (June 2005)
    posted to bibtex-import by naegele to the group ic4 on 2007-09-03 16:53:17 as read
  • Mutual Information
    (May 2005)
    posted to bibtex-import by naegele to the group ic4 on 2007-09-03 16:53:17 as read
  • Mutual Information
    (May 2005)
    posted to bibtex-import by naegele to the group ic4 on 2007-09-03 16:53:17 as read
  • Word association norms, mutual information, and lexicography
    Computational Linguistics, Vol. 16, No. 1. (1990), pp. 22-29.
    by Kenneth W Church, Patrick Hanks
    posted to bibtex-import by naegele to the group ic4 on 2007-09-03 16:53:17 as read
  • Classification, subtype discovery, and prediction of outcome in pediatric acute lymphoblastic leukemia by gene expression profiling
    Cancer Cell, Vol. 1, No. 2. (2002), pp. 133-143.
    by Eng J Yeoh, Mary E Ross, Sheila A Shurtleff, Kent W Williams, Divyen Patel, Rami Mahfouz, Fred G Behm, Susana C Raimondi, Mary V Relling, Anami Patel, Cheng
    posted to bibtex-import by naegele to the group ic4 on 2007-09-03 16:53:17 as read
  • Global Gene Expression Analysis of Gastric Cancer by Oligonucleotide Microarrays
    Cancer Research, Vol. 62 (January 2002), pp. 233-240.
    by Yoshitaka Hippo, Hirokazu Taniguchi, Shuichi Tsutsumi, Naoko Machida, Ja M Chong, Masashi Fukayama, Tatsuhiko Kodama, Hiroyuki Aburatani
    posted to bibtex-import by naegele to the group ic4 on 2007-09-03 16:53:17 as read
  • A mathematical theory of communication
    Bell System Technical Journal, Vol. 27 (1948)
    by CE Shannon
    posted to bibtex-import by naegele to the group ic4 on 2007-09-03 16:53:17 as read
  • On information and sufficiency
    Annals of Mathematical Statistics, Vol. 22 (1951), pp. 49-86.
    by S Kullback, RA Leibler
    posted to bibtex-import by naegele to the group ic4 on 2007-09-03 16:53:17 as read
  • Simulated annealing: theory and applications
    (1987)
    edited by PJM Laarhoven, EHL Aarts
    posted to bibtex-import by naegele to the group ic4 on 2007-09-03 16:53:17 as read
  • Optimization by Simulated Annealing
    Science, Number 4598, 13 May 1983, Vol. 220, No. 4598. (1983), pp. 671-680.
    by S Kirkpatrick, CD Gelatt, MP Vecchi
    posted to bibtex-import by naegele to the group ic4 on 2007-09-03 16:53:17 as read
  • Estimating the dimension of a model
    Annals of Statistics, Vol. 6 (1978), pp. 461-464.
    by G Schwarz
    posted to bibtex-import by naegele to the group ic4 on 2007-09-03 16:53:17 as read
  • Inference in Belief Networks: A Procedural Guide
    International Journal of Approximate Reasoning, Vol. 15, No. 3. (1996), pp. 225-263.
    by C Huang, A Darwiche
    posted to bibtex-import by naegele to the group ic4 on 2007-09-03 16:53:17 as read
  • From Influence Diagrams to Junction Trees
    (1994), pp. 367-373.
    by Frank Jensen, Finn V Jensen, Soren L Dittmer
    edited by Lopez R de Mantaras, D Poole
    posted to bibtex-import by naegele to the group ic4 on 2007-09-03 16:53:17 as read
  • Optimal Junction Trees
    (1994), pp. 360-366.
    by Finn V Jensen, Frank Jensen
    edited by Lopez R de Mantaras, D Poole
    posted to bibtex-import by naegele to the group ic4 on 2007-09-03 16:53:17 as read
  • Generalizing variable elimination in Bayesian networks
    (2000), pp. 27-32.
    by FG Cozman
    posted to bibtex-import by naegele to the group ic4 on 2007-09-03 16:53:17 as read
  • The ALARM Monitoring System: A Case Study with Two Probabilistic Inference Techniques for Belief Networks
    Vol. 38 (1989), pp. 247-256.
    by IA Beinlich, HJ Suermondt, RM Chavez, GF Cooper
    posted to bibtex-import by naegele to the group ic4 on 2007-09-03 16:53:17 as read
  • Adaptive Probabilistic Networks with Hidden Variables
    Machine Learning, Vol. 29, No. 2-3. (1997), pp. 213-244.
    by John Binder, Daphne Koller, Stuart Russell, Keiji Kanazawa
    posted to bibtex-import by naegele to the group ic4 on 2007-09-03 16:53:17 as read
  • The Bayesian structural EM algorithm
    (1998), pp. 129-138.
    by Nir Friedman
    posted to bibtex-import by naegele to the group ic4 on 2007-09-03 16:53:17 as read
  • Learning Belief Networks in the Presence of Missing Values and Hidden Variables
    (1997), pp. 125-133.
    by Nir Friedman
    posted to bibtex-import by naegele to the group ic4 on 2007-09-03 16:53:17 as read
  • Learning Bayesian Belief Networks: An Approach Based on the MDL Principle
    Vol. 10 (1994), pp. 269-293.
    by Wai Lam, Fahiem Bacchus
    posted to bibtex-import by naegele to the group ic4 on 2007-09-03 16:53:17 as read
  • A Bayesian method for constructing Bayesian belief networks from databases
    (1991), pp. 86-94.
    by Gregory F Cooper, Edward Herskovits
    edited by GF Cooper, S Moral
    posted to bibtex-import by naegele to the group ic4 on 2007-09-03 16:53:17 as read
  • Learning Bayesian Network Structure from Distributed Data
    (May 2003), pp. 284-288.
    by R Chen, K Sivakumar, H Kargupta
    posted to bibtex-import by naegele to the group ic4 on 2007-09-03 16:53:17 as read
  • Learning Bayesian Network Structure from Massive Datasets: The ”Sparse Candidate” Algorithm
    (1999), pp. 206-215.
    by Nir Friedman, Iftach Nachman, Dana Peér
    posted to bibtex-import by naegele to the group ic4 on 2007-09-03 16:53:17 as read
  • Learning Bayesian Networks: The Combination of Knowledge and Statistical Data
    Machine Learning, Vol. 20, No. 3. (Sep 1995), pp. 197-243.
    by David Heckerman, Dan Geiger, David M Chickering
    posted to bibtex-import by naegele to the group ic4 on 2007-09-03 16:53:17 as read
  • A Tutorial on Learning With Bayesian Networks
    (March 1995)
    by David Heckerman
    posted to bibtex-import by naegele to the group ic4 on 2007-09-03 16:53:17 as read
  • Learning Bayesian Networks from Incomplete Data
    (1997), pp. 27-31.
    by Moninder Singh
    posted to bibtex-import by naegele to the group ic4 on 2007-09-03 16:53:17 as read
  • Learning from Incomplete Data
    (1994)
    by Zoubin Ghahramani, Michael I Jordan
    posted to bibtex-import by naegele to the group ic4 on 2007-09-03 16:53:17 as read
  • Maximum likelihood from incomplete data via the EM algorithm
    Royal statistical Society B, Vol. 39 (1977), pp. 1-38.
    by A Dempster, N Laird, D Rubin
    posted to bibtex-import by naegele to the group ic4 on 2007-09-03 16:53:17 as read
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