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Group: baker-group - with tag mathematics [461 articles]

Recent papers posted by members of the baker-group group with tag mathematics
  • On the application of the Arlequin method to the coupling of particle and continuum models
    Computational Mechanics, Vol. 42, No. 4. (2008), pp. 511-530.
    by Paul Bauman, Hachmi Dhia, Nadia Elkhodja, J Oden, Serge Prudhomme
    posted to multiscale mechanics mathematics by sobolevnrm to the group baker-group on 2008-07-25 12:06:05 as read
  • A meshless, spectrally accurate, integral equation solver for molecular surface electrostatics
    J. Emerg. Technol. Comput. Syst., Vol. 4, No. 2. (April 2008), pp. 1-30.
    by Shih-Hsien Kuo, Bruce Tidor, Jacob White
    posted to solvation software mathematics electrostatics by sobolevnrm to the group baker-group on 2008-07-24 11:45:11 as read
  • Robustly Estimating the Flow Direction of Information in Complex Physical Systems
    Physical Review Letters, Vol. 100, No. 23. (2008)
    by Guido Nolte, Andreas Ziehe, Vadim V Nikulin, Alois Schlögl, Nicole Krämer, Tom Brismar, Klaus R Müller
    posted to statistics mathematics by sobolevnrm to the group baker-group on 2008-07-21 21:00:20 as read along with 5 people josepe tjpp hywel beete briordan
  • An iterative boundary potential method for the infinite domain Poisson problem with interior Dirichlet boundaries
    Journal of Computational Physics, Vol. 227, No. 16. (10 August 2008), pp. 7917-7928.
    by GH Miller
    posted to mathematics electrostatics by sobolevnrm to the group baker-group on 2008-07-08 12:02:17 as read
  • Local spectral time splitting method for first- and second-order partial differential equations
    Journal of Computational Physics, Vol. 206, No. 2. (1 July 2005), pp. 727-780.
    by Sining Yu, Shan Zhao, GW Wei
    posted to molecular_dynamics mathematics kinetics by sobolevnrm to the group baker-group on 2008-07-01 03:10:54 as read
  • On the fictitious-domain and interpolation formulations of the matched interface and boundary (MIB) method
    Journal of Computational Physics, Vol. 219, No. 1. (20 November 2006), pp. 228-246.
    by YC Zhou, GW Wei
    posted to mathematics electrostatics by sobolevnrm to the group baker-group on 2008-07-01 02:39:39 as read
  • High order matched interface and boundary method for elliptic equations with discontinuous coefficients and singular sources
    Journal of Computational Physics, Vol. 213, No. 1. (20 March 2006), pp. 1-30.
    by YC Zhou, Shan Zhao, Michael Feig, GW Wei
    posted to mathematics electrostatics by sobolevnrm to the group baker-group on 2008-07-01 02:37:16 as read
  • High-order FDTD methods via derivative matching for Maxwell's equations with material interfaces
    Journal of Computational Physics, Vol. 200, No. 1. (10 October 2004), pp. 60-103.
    by Shan Zhao, GW Wei
    posted to mathematics electrostatics by sobolevnrm to the group baker-group on 2008-07-01 02:33:13 as read
  • Matched interface and boundary (MIB) method for elliptic problems with sharp-edged interfaces
    Journal of Computational Physics, Vol. 224, No. 2. (10 June 2007), pp. 729-756.
    by Sining Yu, Yongcheng Zhou, GW Wei
    posted to solvation mathematics electrostatics by sobolevnrm to the group baker-group on 2008-07-01 02:31:14 as read
  • A Level Set Formulation for the Solution of the Dirichlet Problem for Hamilton--Jacobi Equations
    SIAM Journal on Mathematical Analysis, Vol. 24, No. 5. (1993), pp. 1145-1152.
    by Stanley Osher
    posted to mathematics by sobolevnrm to the group baker-group on 2008-07-01 02:26:27 as read
  • Fronts propagating with curvature-dependent speed: algorithms based on Hamilton-Jacobi formulations
    J. Comput. Phys., Vol. 79, No. 1. (November 1988), pp. 12-49.
    by Stanley Osher, James A Sethian
    posted to mathematics by sobolevnrm to the group baker-group on 2008-07-01 02:24:41 as read along with 2 people gerardotp kutabar
  • Nonlinear total variation based noise removal algorithms
    (1992), pp. 259-268.
    by Leonid I Rudin, Stanley Osher, Emad Fatemi
    posted to mathematics by sobolevnrm to the group baker-group on 2008-07-01 02:21:35 as ** along with 1 person derinb
  • Discrete surface modelling using partial differential equations
    Computer Aided Geometric Design, Vol. 23, No. 2. (February 2006), pp. 125-145.
    by Guoliang Xu, Qing Pan, Chandrajit L Bajaj
    posted to mathematics by sobolevnrm to the group baker-group on 2008-07-01 02:19:16 as read
  • A general framework for low level vision
    Image Processing, IEEE Transactions on, Vol. 7, No. 3. (1998), pp. 310-318.
    by N Sochen, R Kimmel, R Malladi
    posted to mathematics by sobolevnrm to the group baker-group on 2008-07-01 02:17:06 as read along with 1 person derinb
  • Evolution, Implementation, and Application of Level Set and Fast Marching Methods for Advancing Fronts
    Journal of Computational Physics, Vol. 169, No. 2. (20 May 2001), pp. 503-555.
    by JA Sethian
    posted to mathematics by sobolevnrm to the group baker-group on 2008-07-01 02:15:08 as read
  • 3D Curves Reconstruction Based on Deformable Models
    Journal of Mathematical Imaging and Vision, Vol. 18, No. 3. (21 May 2003), pp. 211-223.
    by Catalina Sbert, Andreas F Solé
    posted to mathematics by sobolevnrm to the group baker-group on 2008-07-01 02:12:20 as read
  • Subjective Surfaces: A Geometric Model for Boundary Completion
    International Journal of Computer Vision, Vol. 46, No. 3. (1 February 2002), pp. 201-221.
    by A Sarti, R Malladi, JA Sethian
    posted to mathematics by sobolevnrm to the group baker-group on 2008-07-01 02:10:29 as read
  • Level Set Methods: An Overview and Some Recent Results
    Journal of Computational Physics, Vol. 169, No. 2. (20 May 2001), pp. 463-502.
    by Stanley Osher, Ronald P Fedkiw
    posted to mathematics by sobolevnrm to the group baker-group on 2008-07-01 02:08:08 as read
  • A direct method for solving an anisotropic mean curvature flow of plane curves with an external force
    Mathematical Methods in the Applied Sciences, Vol. 27, No. 13. (2004), pp. 1545-1565.
    by Karol Mikula, Daniel &sbreve;ev&cbreve;ovi&cbreve;
    posted to mathematics by sobolevnrm to the group baker-group on 2008-07-01 02:01:56 as read
  • Analysis of a fully discrete finite element method for the phase field model and approximation of its sharp interface limits
    Mathematics of Computation, Vol. 73 (2004), pp. 541-567.
    by X Feng, A Prohl
    posted to mathematics by sobolevnrm to the group baker-group on 2008-06-30 15:48:01 as read
  • The minimal molecular surface
    (20 Oct 2006)
    by PW Bates, GW Wei, Shan Zhao
    posted to solvation mathematics electrostatics by sobolevnrm to the group baker-group on 2008-06-30 15:42:08 as read
  • Analytical molecular surface calculation
    Journal of Applied Crystallography, Vol. 16, No. 5. (Oct 1983), pp. 548-558.
    by ML Connolly
    posted to solvation mathematics electrostatics by sobolevnrm to the group baker-group on 2008-06-30 12:50:46 as read along with 1 person sithmein
  • Exact Solutions for Kinetic Models of Macromolecular Dynamics
    J. Phys. Chem. B, Vol. 112, No. 19. (15 May 2008), pp. 6025-6044.
    by YR Chemla, JR Moffitt, C Bustamante
    posted to mathematics kinetics by sobolevnrm to the group baker-group on 2008-06-26 12:01:41 as read
  • An interlacing theorem for reversible Markov chains
    Journal of Physics A: Mathematical and Theoretical, Vol. 41, No. 21. (2008), 212002.
    by Robert Grone, Karl H Hoffmann, Peter Salamon
    posted to mathematics kinetics by sobolevnrm to the group baker-group on 2008-06-20 11:36:58 as read
  • Connecting Atomistic-to-Continuum Coupling and Domain Decomposition
    Multiscale Modeling & Simulation, Vol. 7, No. 1. (2008), pp. 362-380.
    by Michael L Parks, Pavel B Bochev, Richard B Lehoucq
    posted to multiscale mechanics mathematics by sobolevnrm to the group baker-group on 2008-06-16 12:19:46 as read
  • The Block-P3M algorithm
    Computer Physics Communications, Vol. 179, No. 1-3. (July 2008), pp. 46-50.
    by JW Eastwood
    posted to molecular_simulation mathematics electrostatics by sobolevnrm to the group baker-group on 2008-06-07 15:27:27 as read
  • Coarse graining of master equations with fast and slow states
    The Journal of Chemical Physics, Vol. 128, No. 15. (2008)
    by Simone Pigolotti, Angelo Vulpiani
    posted to statistical_mechanics mathematics kinetics by sobolevnrm to the group baker-group on 2008-05-22 11:56:49 as read
  • Analytical Approximation for the Generalized Laplace Equation with Step Function Coefficient
    SIAM Journal on Applied Mathematics, Vol. 68, No. 5. (2008), pp. 1268-1281.
    by RF Sviercoski, CL Winter, AW Warrick
    posted to mathematics electrostatics by sobolevnrm to the group baker-group on 2008-05-14 12:00:34 as read
  • Quasi Monte Carlo-based isotropic distribution of gradient directions for improved reconstruction quality of 3D EPR imaging
    Journal of Magnetic Resonance, Vol. 184, No. 2. (February 2007), pp. 236-245.
    by Rizwan Ahmad, Yuanmu Deng, Deepti S Vikram, Bradley Clymer, Parthasarathy Srinivasan, Jay L Zweier, Periannan Kuppusamy
    posted to visualization mathematics imagining by sobolevnrm to the group baker-group on 2008-05-12 17:59:05 as read
  • Rapid approximation to molecular surface area via the use of Boolean logic and look-up tables
    Journal of Computational Chemistry, Vol. 14, No. 3. (1993), pp. 349-352.
    by SM Le Grand, Jr Merz
    posted to solvation molecular_simulation mathematics electrostatics by sobolevnrm to the group baker-group on 2008-05-12 17:54:03 as read
  • Numerical Recipes: The Art of Scientific Computing
    (01 August 2007)
    by William H Press, Saul A Teukolsky, William T Vetterling, Brian P Flannery
    posted to statistics review mathematics by sobolevnrm to the group baker-group on 2008-04-29 12:15:42 as read along with 10 people wvangeit diancu ansobol mshafiei 6rheology mmeteo harish Zaphod seana OndrejMarsalek
  • What is principal component analysis?
    Nature Biotechnology, Vol. 26, No. 3., pp. 303-304.
    by Markus Ringnér
    posted to statistics quasiharmonic-models_elastic-network_gnm_nma_pca_etc mathematics clustering by sobolevnrm to the group baker-group on 2008-04-28 11:33:49 as read along with 54 people and 2 groups Nici jdiezperezj mjoach ale rrbarb HugoMarcelo tharris rsantana kengg laharrin chrissp100 xingxu dekay23 rvosa i-stevenson dimka dayjm markusd ashko craigwilson06 abbie_riner quianominorleo bibay2004 jfr kristgy pavanghatty rchauhan waghsk hpaces adacier fryanpan Yanno jyuh operon barry baaic dullhunk Bevan_Weir zeji gareth massivemayhem zwang GustavoLacerda GeeSharpMinor bmaust zambujo mingzhi starz1010101 maralena wchannels sunhwan jennifermbui kdelavega zhouyu FAB-lab Bioinformatics
  • Feature-preserving adaptive mesh generation for molecular shape modeling and simulation
    Journal of Molecular Graphics and Modelling, Vol. In Press, Corrected Proof
    by Zeyun Yu, Michael J Holst, Yuhui Cheng, Mccammon
    posted to visualization mathematics by sobolevnrm to the group baker-group on 2008-04-24 15:11:15 as read
  • Laplacian spectra as a diagnostic tool for network structure and dynamics
    Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 77, No. 3. (2008)
    by Patrick N Mcgraw, Michael Menzinger
    posted to clustering graph_theory mathematics by sobolevnrm to the group baker-group on 2008-03-05 11:49:33 as read
  • Theory and Simulation of Diffusion-Controlled Michaelis-Menten Kinetics for a Static Enzyme in Solution
    J. Phys. Chem. B (26 January 2008)
    by S Park, N Agmon
    posted to diffusion kinetics mathematics by sobolevnrm to the group baker-group on 2008-02-26 11:51:21 as read
  • A new minimization protocol for solving nonlinear Poisson–Boltzmann mortar finite element equation
    BIT Numerical Mathematics, Vol. 47, No. 4. (4 December 2007), pp. 853-871.
    by Dexuan Xie, Shuzi Zhou
    posted to electrostatics finite_element mathematics by sobolevnrm to the group baker-group on 2008-02-18 12:52:38 as read
  • Diffusion maps, spectral clustering and reaction coordinates of dynamical systems
    ArXiv Mathematics e-prints (March 2005)
    by B Nadler, S Lafon, RR Coifman, IG Kevrekidis
    posted to clustering mathematics quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm to the group baker-group on 2008-02-01 21:23:15 as ***** along with 2 people j_vinals kb
  • Diffusion Maps, Spectral Clustering and Eigenfunctions of Fokker-Planck operators
    (6 Jun 2005)
    by Boaz Nadler, Stephane Lafon, Ronald R Coifman, Ioannis G Kevrekidis
    posted to clustering mathematics quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm to the group baker-group on 2008-02-01 21:22:37 as *****
  • Diffusion maps, spectral clustering and reaction coordinates of dynamical systems
    Applied and Computational Harmonic Analysis, Vol. 21, No. 1. (July 2006), pp. 113-127.
    by Boaz Nadler, Stephane Lafon, Ronald R Coifman, Ioannis G Kevrekidis
    posted to clustering mathematics quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm to the group baker-group on 2008-02-01 16:15:44 as read
  • Diffusion maps
    Applied and Computational Harmonic Analysis, Vol. 21, No. 1. (July 2006), pp. 5-30.
    by Ronald R Coifman, Stephane Lafon
    posted to clustering mathematics quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm to the group baker-group on 2008-02-01 16:09:52 as read along with 1 person baueru
  • Non-linear independent component analysis with diffusion maps
    Applied and Computational Harmonic Analysis, Vol. In Press, Corrected Proof
    by Amit Singer, Ronald R Coifman
    posted to clustering mathematics quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm to the group baker-group on 2008-02-01 16:06:54 as read
  • Geometric diffusions as a tool for harmonic analysis and structure definition of data: Diffusion maps
    Proceedings of the National Academy of Sciences, Vol. 102, No. 21. (24 May 2005), pp. 7426-7431.
    by RR Coifman, S Lafon, AB Lee, M Maggioni, B Nadler, F Warner, SW Zucker
    posted to bioinformatics clustering mathematics quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm to the group baker-group on 2008-02-01 15:54:49 as read along with 1 person kb
  • Immersed-Interface Finite-Element Methods for Elliptic Interface Problems with Nonhomogeneous Jump Conditions
    SIAM Journal on Numerical Analysis, Vol. 46, No. 1. (2008), pp. 472-495.
    by Yan Gong, Bo Li, Zhilin Li
    posted to electrostatics mathematics by sobolevnrm to the group baker-group on 2008-01-30 18:45:51 as read
  • Adaptive finite element approximation of multiphysics problems
    Communications in Numerical Methods in Engineering, Vol. 9999, No. 9999. (2007), n/a.
    by Mats G Larson, Fredrik Bengzon
    posted to mathematics multiscale by sobolevnrm to the group baker-group on 2008-01-30 12:31:17 as read
  • Pattern vectors from algebraic graph theory
    Pattern Analysis and Machine Intelligence, IEEE Transactions on, Vol. 27, No. 7. (2005), pp. 1112-1124.
    by RC Wilson, ER Hancock, Bin Luo
    posted to bioinformatics graph_theory mathematics quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm to the group baker-group on 2008-01-24 12:53:27 as read along with 1 person bigbossman
  • On a conjecture regarding the synchronization in an array of linearly coupled dynamical systems
    Circuits and Systems I: Fundamental Theory and Applications, IEEE Transactions on [see also Circuits and Systems I: Regular Papers, IEEE Transactions on], Vol. 43, No. 2. (1996), pp. 161-165.
    by Chai W Wu, LO Chua
    posted to graph_theory mathematics by sobolevnrm to the group baker-group on 2008-01-23 14:26:47 as read
  • Application of graph theory to the synchronization in an array of coupled nonlinear oscillators
    Circuits and Systems I: Fundamental Theory and Applications, IEEE Transactions on [see also Circuits and Systems I: Regular Papers, IEEE Transactions on], Vol. 42, No. 8. (1995), pp. 494-497.
    by Chai W Wu, LO Chua
    posted to graph_theory mathematics by sobolevnrm to the group baker-group on 2008-01-23 14:15:03 as read
  • A particle-particle, particle-density algorithm for the calculation of electrostatic interactions of particles with slablike geometry
    The Journal of Chemical Physics, Vol. 127, No. 22. (2007)
    by Alireza S Ghasemi, Alexey Neelov, Stefan Goedecker
    posted to electrostatics mathematics molecular_dynamics molecular_simulation by sobolevnrm to the group baker-group on 2008-01-22 12:44:43 as read along with 1 person softsimu
  • Construction of effective free energy landscape from single-molecule time series
    Proceedings of the National Academy of Sciences, Vol. 104, No. 49. (4 December 2007), pp. 19297-19302.
    by Akinori Baba, Tamiki Komatsuzaki
    posted to mathematics molecular_simulation quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm to the group baker-group on 2008-01-10 12:46:56 as read along with 6 people hsekiguc hmk zwang cactus Diego_Prada arnaudriegert
  • A mathematical tool for exploring the dynamics of biological networks
    Proceedings of the National Academy of Sciences (21 November 2007), 0709955104.
    by Paolo E Barbano, Marina Spivak, Marc Flajolet, Angus C Nairn, Paul Greengard, Leslie Greengard
    posted to mathematics systems_biology by sobolevnrm to the group baker-group on 2008-01-10 12:32:48 as read along with 9 people tmmurali cjeans zwang cactus forgoston lenov sdbneuro mdramirez phoenixzxl
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