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Group: Koch_Lab - library [106 articles]

Recent papers posted by members of the Koch_Lab group
  • A mechanical unfolding intermediate in an actin-crosslinking protein
    Nat Struct Mol Biol, Vol. 11, No. 1. (January 2004), pp. 81-85.
    by Ingo Schwaiger, Angelika Kardinal, Michael Schleicher, Angelika A Noegel, Matthias Rief
    posted to single-molecule polyglycine by skoch3 to the group Koch_Lab on 2008-09-22 08:40:56 as *** along with 1 person ruudvanleeuwen
  • Single Molecule Force Spectroscopy on Polysaccharides by Atomic Force Microscopy
    Science, Vol. 275, No. 5304. (28 February 1997), pp. 1295-1297.
    by Matthias Rief, Filipp Oesterhelt, Berthold Heymann, Hermann E Gaub
    posted to single-molecule polysaccharide biophysics by skoch3 to the group Koch_Lab on 2008-09-22 08:16:24 as read
  • Polysaccharide elasticity governed by chair-boat transitions of the glucopyranose ring.
    Nature, Vol. 396, No. 6712. (17 December 1998), pp. 661-664.
    by PE Marszalek, AF Oberhauser, YP Pang, JM Fernandez
    posted to single-molecule polysaccharide biophysics by skoch3 to the group Koch_Lab on 2008-09-22 08:13:26 as read
  • Chair-boat transitions in single polysaccharide molecules observed with force-ramp AFM
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 7. (2 April 2002), pp. 4278-4283.
    by Piotr E Marszalek, Hongbin Li, Andres F Oberhauser, Julio M Fernandez
    posted to single-molecule polysaccharide biophysics by skoch3 to the group Koch_Lab on 2008-09-22 08:05:35 as read
  • Mapping and sequencing of structural variation from eight human genomes
    Nature, Vol. 453, No. 7191., pp. 56-64.
    by Jeffrey M Kidd, Gregory M Cooper, William F Donahue, Hillary S Hayden, Nick Sampas, Tina Graves, Nancy Hansen, Brian Teague, Can Alkan, Francesca Antonacci, Eric Haugen, Troy Zerr, Alice N Yamada, Peter Tsang, Tera L Newman, Eray Tüzün, Ze Cheng, Heather M Ebling, Nadeem Tusneem, Robert David, Will Gillett, Karen A Phelps, Molly Weaver, David Saranga, Adrianne Brand, Wei Tao, Erik Gustafson, Kevin Mckernan, Lin Chen, Maika Malig, Joshua D Smith, Joshua M Korn, Steven A Mccarroll, David A Altshuler, Daniel A Peiffer, Michael Dorschner, John Stamatoyannopoulos, David Schwartz, Deborah A Nickerson, James C Mullikin, Richard K Wilson, Laurakay Bruhn, Maynard V Olson, Rajinder Kaul, Douglas R Smith, Evan E Eichler
    posted to dna genome genomics mapping by skoch3 to the group Koch_Lab on 2008-08-20 08:07:21 as ***** along with 19 people and 1 group waszak matthewsuderman jfr hpaces Ema chad_davis bpb dchughes djkt balicea shikin psique kintoki kaniko aprasad vplagnol maximilianh chrisamiller jyuh GeneGo
  • DNA overwinds when stretched
    Nature, Vol. 442, No. 7104. (12 July 2006), pp. 836-839.
    by Jeff Gore, Zev Bryant, Marcelo Nã¶llmann, Mai U Le, Nicholas R Cozzarelli, Carlos Bustamante
    posted to dna magnetic single-molecule by skoch3 to the group Koch_Lab on 2008-07-07 06:49:38 as read
  • Tuneable elastomeric nanochannels for nanofluidic manipulation
    Nat Mater, Vol. 6, No. 6. (June 2007), pp. 424-428.
    by Dongeun Huh, KL Mills, Xiaoyue Zhu, Mark A Burns, MD Thouless, Shuichi Takayama
    posted to dna nanochannels nanotechnology pdms by skoch3 to the group Koch_Lab on 2008-07-01 06:41:59 as ****
  • Active PHO5 chromatin encompasses variable numbers of nucleosomes at individual promoters
    Nature Structural & Molecular Biology, Vol. 13, No. 3. (19 February 2006), pp. 256-263.
    by Walter J Jessen, Scott A Hoose, Jessica A Kilgore, Michael P Kladde
    posted to chromatin pho5 remodeling single-molecule by skoch3 to the group Koch_Lab on 2008-06-19 18:10:02 as ***** along with 1 person ramalldf
  • Single-Molecule Studies Reveal Dynamics of DNA Unwinding by the Ring-Shaped T7 Helicase
    Cell, Vol. 129, No. 7. (29 June 2007), pp. 1299-1309.
    by Daniel S Johnson, Lu Bai, Benjamin Y Smith, Smita S Patel, Michelle D Wang
    posted to biophysics dna helicase single-molecule unzipping by skoch3 to the group Koch_Lab on 2008-06-14 23:31:19 as read
  • Affinity purification of specific chromatin segments from chromosomal loci in yeast.
    Molecular and cellular biology, Vol. 23, No. 24. (December 2003), pp. 9275-9282.
    by J Griesenbeck, H Boeger, JS Strattan, RD Kornberg
    posted to chromatin isolation purification transcription yeast by skoch3 to the group Koch_Lab on 2008-05-29 07:03:50 as *****
  • A general method for manipulating DNA sequences from any organism with optical tweezers
    Nucleic Acids Research, Vol. 34, No. 2. (2006), pp. e15-e15.
    by Derek N Fuller, Gregory J Gemmen, John P Rickgauer, Aurelie Dupont, Rachel Millin, Pierre Recouvreux, Douglas E Smith
    posted to dna optical pcr single-molecule tethering tweezers by skoch3 to the group Koch_Lab on 2008-05-20 00:10:11 as ****
  • Capturing Chromosome Conformation
    Science, Vol. 295, No. 5558. (15 February 2002), pp. 1306-1311.
    by Job Dekker, Karsten Rippe, Martijn Dekker, Nancy Kleckner
    posted to chromatin digestion in-vivo yeast by skoch3 to the group Koch_Lab on 2008-05-19 18:29:59 as read along with 1 person ccr
  • Histone Octamer Instability under Single Molecule Experiment Conditions
    J. Biol. Chem., Vol. 280, No. 20. (20 May 2005), pp. 19958-19965.
    by Cyril Claudet, Dimitar Angelov, Philippe Bouvet, Stefan Dimitrov, Jan Bednar
    posted to biophysics chromatin native single-molecule by skoch3 to the group Koch_Lab on 2008-05-15 10:10:01 as *****
  • On-site manipulation of single whole-genome DNA molecules using optical tweezers
    Applied Physics Letters, Vol. 85, No. 21. (2004), pp. 5090-5092.
    by Hidehiro Oana, Koji Kubo, Kenichi Yoshikawa, Haruyuki Atomi, Tadayuki Imanaka
    posted to chromatin optical single-molecule tweezers by skoch3 to the group Koch_Lab on 2008-05-15 05:22:37 as ***** along with 1 person hirokiS
  • Pulling a single chromatin fiber reveals the forces that maintain its higher-order structure.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 97, No. 1. (4 January 2000), pp. 127-132.
    by Y Cui, C Bustamante
    posted to chromatin single-molecule by skoch3 to the group Koch_Lab on 2008-05-15 00:06:33 as read
  • Overstretching B-DNA: The Elastic Response of Individual Double-Stranded and Single-Stranded DNA Molecules
    Science, Vol. 271, No. 5250. (9 February 1996), pp. 795-799.
    by Steven B Smith, Yujia Cui, Carlos Bustamante
    posted to chain dna fjc freely-jointed overstretching single-molecule wlc worm-like by skoch3 to the group Koch_Lab on 2008-05-07 07:57:43 as read along with 1 person phisics
  • Rad6-dependent ubiquitination of histone H2B in yeast.
    Science (New York, N.Y.), Vol. 287, No. 5452. (21 January 2000), pp. 501-504.
    by K Robzyk, J Recht, MA Osley
    posted to h2b h2bub histone rad6 ubiquitylation by skoch3 to the group Koch_Lab on 2008-05-06 23:12:11 as read
  • Regulation of histone H2A and H2B ubiquitylation.
    Briefings in functional genomics & proteomics, Vol. 5, No. 3. (September 2006), pp. 179-189.
    by MA Osley
    posted to h2a h2b histone review ubiquitylation by skoch3 to the group Koch_Lab on 2008-05-06 23:11:26 as read
  • Evidence for histone eviction in trans upon induction of the yeast PHO5 promoter.
    Molecular and cellular biology, Vol. 24, No. 24. (December 2004), pp. 10965-10974.
    by P Korber, T Luckenbach, D Blaschke, W Hörz
    posted to chromatin pho5 remodeling transcription by skoch3 to the group Koch_Lab on 2008-05-06 17:48:04 as read
  • Restriction nucleases as probes for chromatin structure.
    Methods in molecular biology (Clifton, N.J.), Vol. 119 (1999), pp. 417-425.
    by PD Gregory, S Barbaric, W Hörz
    posted to chromatin enzymes remodeling restriction by skoch3 to the group Koch_Lab on 2008-05-06 17:47:16 as read
  • de FACTo nucleosome dynamics.
    J Biol Chem (9 June 2006)
    by Danny Reinberg, Robert J J Sims
    posted to chromatin fact remodeling transcription by skoch3 to the group Koch_Lab on 2008-05-06 17:03:31 as read along with 1 person and 1 group xico WetBiology
  • FACT, a factor that facilitates transcript elongation through nucleosomes.
    Cell, Vol. 92, No. 1. (9 January 1998), pp. 105-116.
    by G Orphanides, G LeRoy, CH Chang, DS Luse, D Reinberg
    posted to chromatin fact transcription by skoch3 to the group Koch_Lab on 2008-05-06 17:02:13 as read
  • BRCA1 is a component of the RNA polymerase II holoenzyme
    Proceedings of the National Academy of Sciences, Vol. 94, No. 11. (27 May 1997), pp. 5605-5610.
    by Ralph Scully, Stephen F Anderson, David M Chao, Wanjiang Wei, Liyan Ye, Richard A Young, David M Livingston, Jeffrey D Parvin
    posted to brca1 holoenzyme ii pol transcription by skoch3 to the group Koch_Lab on 2008-05-05 08:21:01 as *****
  • Regulation of DNA double-strand break repair pathway choice
    Cell Res, Vol. 18, No. 1. (0000), pp. 134-147.
    by Meena Shrivastav, Leyma P De Haro, Jac A Nickoloff
    posted to break dna double-strand dsb repair by skoch3 to the group Koch_Lab on 2008-05-05 06:16:10 as read along with 2 people lyndallsarkies jyuh
  • The multiple nuclear functions of BRCA1: transcription, ubiquitination and DNA repair
    Current Opinion in Cell Biology, Vol. 15, No. 3. (June 2003), pp. 345-350.
    by Lea M Starita, Jeffrey D Parvin
    posted to brca1 damage dna repair transcription by skoch3 to the group Koch_Lab on 2008-05-05 06:08:58 as *****
  • The BRCA2-Interacting Protein BCCIP Functions in RAD51 and BRCA2 Focus Formation and Homologous Recombinational Repair
    Mol. Cell. Biol., Vol. 25, No. 5. (1 March 2005), pp. 1949-1957.
    by Huimei Lu, Xu Guo, Xiangbing Meng, Jingmei Liu, Chris Allen, Justin Wray, Jac A Nickoloff, Zhiyuan Shen
    posted to bccip brca2 damage dna hr rad51 repair by skoch3 to the group Koch_Lab on 2008-05-04 06:11:13 as *****
  • BCCIP regulates homologous recombination by distinct domains and suppresses spontaneous DNA damage.
    Nucleic acids research, Vol. 35, No. 21. (2007), pp. 7160-7170.
    by H Lu, J Yue, X Meng, JA Nickoloff, Z Shen
    posted to bccip brca2 damage dna hr repair by skoch3 to the group Koch_Lab on 2008-05-04 06:04:31 as ****
  • Checkpoint kinase 2-mediated phosphorylation of BRCA1 regulates the fidelity of nonhomologous end-joining.
    Cancer research, Vol. 66, No. 3. (1 February 2006), pp. 1401-1408.
    by J Zhuang, J Zhang, H Willers, H Wang, JH Chung, DC van Gent, DE Hallahan, SN Powell, F Xia
    posted to brca1 damage dna dsb hr nhej repair by skoch3 to the group Koch_Lab on 2008-05-04 05:45:24 as ****
  • Concerted transcriptional regulation by BRCA1 and COBRA1 in breast cancer cells.
    International journal of biological sciences, Vol. 3, No. 7. (2007), pp. 486-492.
    by SE Aiyar, H Cho, J Lee, R Li
    posted to brca1 breast cancer cobra1 transcription by skoch3 to the group Koch_Lab on 2008-05-03 09:08:03 as ***
  • NELF, a multisubunit complex containing RD, cooperates with DSIF to repress RNA polymerase II elongation.
    Cell, Vol. 97, No. 1. (2 April 1999), pp. 41-51.
    by Y Yamaguchi, T Takagi, T Wada, K Yano, A Furuya, S Sugimoto, J Hasegawa, H Handa
    posted to drb nelf transcription by skoch3 to the group Koch_Lab on 2008-05-02 23:41:03 as read
  • Human transcription elongation factor NELF: identification of novel subunits and reconstitution of the functionally active complex.
    Molecular and cellular biology, Vol. 23, No. 6. (March 2003), pp. 1863-1873.
    by T Narita, Y Yamaguchi, K Yano, S Sugimoto, S Chanarat, T Wada, DK Kim, J Hasegawa, M Omori, N Inukai, M Endoh, T Yamada, H Handa
    posted to brca1 cobra1 dsif nelf nelf-b transcription by skoch3 to the group Koch_Lab on 2008-05-02 18:01:59 as *****
  • RNA polymerase is poised for activation across the genome
    Nature Genetics, Vol. 39, No. 12. (11 November 2007), pp. 1507-1511.
    by Ginger W Muse, Daniel A Gilchrist, Sergei Nechaev, Ruchir Shah, Joel S Parker, Sherry F Grissom, Julia Zeitlinger, Karen Adelman
    posted to chip-chip drosophila ii pol stalled transcription by skoch3 to the group Koch_Lab on 2008-05-01 23:46:24 as ***** along with 4 people margaritis rschulz caseybrown mikaelhuss
  • Chromatin remodeling: insights and intrigue from single-molecule studies
    Nature Structural & Molecular Biology, Vol. 14, No. 11. (05 November 2007), pp. 989-996.
    by Bradley R Cairns
    posted to chromatin remodeling review single-molecule by skoch3 to the group Koch_Lab on 2008-04-30 06:21:30 as ***** along with 3 people and 1 group Petersarkies zhlei cwbrown EisenLab
  • Interplay of ion binding and attraction in DNA condensed by multivalent cations
    Nucl. Acids Res., Vol. 36, No. 2. (2 February 2008), pp. 501-510.
    by Brian A Todd, Donald C Rau
    posted to biophysics cations condensation dna force multivalent spectroscopy by skoch3 to the group Koch_Lab on 2008-04-28 20:51:56 as ***** along with 1 person and 1 group sobolevnrm baker-group
  • BRCA1 is associated with a human SWI/SNF-related complex: linking chromatin remodeling to breast cancer.
    Cell, Vol. 102, No. 2. (21 July 2000), pp. 257-265.
    by DA Bochar, L Wang, H Beniya, A Kinev, Y Xue, WS Lane, W Wang, F Kashanchi, R Shiekhattar
    posted to brca1 chromatin remodeling swisnf transcription by skoch3 to the group Koch_Lab on 2008-04-23 21:14:22 as *****
  • Ten-microsecond MD simulation of a fast-folding WW domain
    Biophys. J. (13 March 2008), biophysj.108.131565.
    by Peter L Freddolino, Feng Liu, Martin H Gruebele, Klaus Schulten
    posted to folding md protein by skoch3 to the group Koch_Lab on 2008-04-23 20:30:59 as **** along with 4 people RamuAnandakrishnan paulschlesinger samjlord biehl
  • BRCA1 cooperates with NUFIP and P-TEFb to activate transcription by RNA polymerase II.
    Oncogene, Vol. 23, No. 31. (8 July 2004), pp. 5316-5329.
    by P Cabart, HK Chew, S Murphy
    posted to brca1 elongation p-tefb transcription by skoch3 to the group Koch_Lab on 2008-04-16 08:36:51 as ****
  • From the Cover: Direct DNA binding by Brca1
    Proceedings of the National Academy of Sciences, Vol. 98, No. 11. (22 May 2001), pp. 6086-6091.
    by Tanya T Paull, David Cortez, Blair Bowers, Stephen J Elledge, Martin Gellert
    posted to brca1 damage dna dsb mrn repair by skoch3 to the group Koch_Lab on 2008-04-16 07:15:47 as ****
  • The roles of BRCA1 and BRCA2 and associated proteins in the maintenance of genomic stability.
    Oncogene, Vol. 25, No. 43. (25 September 2006), pp. 5864-5874.
    by K Gudmundsdottir, A Ashworth
    posted to brca1 brca2 dna dsb repair by skoch3 to the group Koch_Lab on 2008-04-16 07:12:35 as ****
  • Good Timing in the Cell Cycle for Precise DNA Repair by BRCA1.
    Cell Cycle, Vol. 4, No. 9. (13 September 2005)
    by Stephen T Durant, Jac A Nickoloff
    posted to brca1 chromatin dna dsb hr mrn nhej repair by skoch3 to the group Koch_Lab on 2008-04-16 07:08:54 as ***** along with 1 person ecattell
  • ATP-dependent chromatin remodeling factors and DNA damage repair
    Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis, Vol. 618, No. 1-2. (1 May 2007), pp. 65-80.
    by Mary A Osley, Toyoko Tsukuda, Jac A Nickoloff
    posted to chromatin damage dna dsb ner repair review by skoch3 to the group Koch_Lab on 2008-04-16 07:04:36 as *****
  • Transcription Regulation Through Promoter-Proximal Pausing of RNA Polymerase II
    Science, Vol. 319, No. 5871. (28 March 2008), pp. 1791-1792.
    by Leighton J Core, John T Lis
    posted to gene puasing regulation transcription by skoch3 to the group Koch_Lab on 2008-04-10 07:08:17 as ***** along with 2 people margaritis biomcgary
  • Single-molecule experiments in vitro and in silico.
    Science, Vol. 316, No. 5828. (25 May 2007), pp. 1144-1148.
    by M Sotomayor, K Schulten
    posted to dynamic dynamics force in-silico molecular single-molecule smd spectroscopy by skoch3 to the group Koch_Lab on 2008-03-31 16:57:09 as ***** along with 2 people choonpeng hsekiguc
  • The epigenomics of cancer.
    Cell, Vol. 128, No. 4. (23 February 2007), pp. 683-692.
    by PA Jones, SB Baylin
    posted to cancer chromatin epigenetics epigenomics remodeling silencing transcription by skoch3 to the group Koch_Lab on 2008-03-31 16:41:04 as read along with 5 people misonneh oelemento SeungjoonOh cerami srp33
  • Probing the relation between force--lifetime--and chemistry in single molecular bonds.
    Annu Rev Biophys Biomol Struct, Vol. 30 (2001), pp. 105-128.
    by E Evans
    posted to classic dynamic force single-molecule spectroscopy by skoch3 to the group Koch_Lab on 2008-03-29 21:11:34 as read along with 1 person hsekiguc
  • EM visualization of Pol II genes in Drosophila: most genes terminate without prior 3' end cleavage of nascent transcripts.
    Chromosoma, Vol. 111, No. 1. (March 2002), pp. 1-12.
    by YN Osheim, ML Sikes, AL Beyer
    posted to em ii pol polymerase termination transcription by skoch3 to the group Koch_Lab on 2008-03-20 05:40:05 as read
  • Detection of High-Affinity and Sliding Clamp Modes for MSH2-MSH6 by Single-Molecule Unzipping Force Analysis
    Molecular Cell, Vol. 20, No. 5. (9 December 2005), pp. 771-781.
    by Jingjing Jiang, Lu Bai, Jennifer A Surtees, Zekeriyya Gemici, Michelle D Wang, Eric Alani
    posted to mismatch ot protein-dna repair unzipping by skoch3 to the group Koch_Lab on 2008-03-18 04:43:47 as read
  • Mg2+-Induced Compaction of Single RNA Molecules Monitored by Tethered Particle Microscopy
    Biophys. J., Vol. 90, No. 10. (15 May 2006), pp. 3672-3685.
    by Newby, Eva Vocker, Seth Blumberg, Stefanie Redemann, Arivalagan Gajraj, Jens-Christian Meiners, Nils G Walter
    posted to motion particle rna tethered tpm by skoch3 to the group Koch_Lab on 2008-03-18 04:33:06 as **** along with 1 person ssfeldman
  • Emergence of Novel Color Vision in Mice Engineered to Express a Human Cone Photopigment
    Science, Vol. 315, No. 5819. (23 March 2007), pp. 1723-1725.
    by Gerald H Jacobs, Gary A Williams, Hugh Cahill, Jeremy Nathans
    posted to color cool trichromacy vision by skoch3 to the group Koch_Lab on 2008-03-16 04:48:10 as read along with 2 people and 2 groups neilh shivakmr VisionLab S-Lab
  • Optical trapping
    Review of Scientific Instruments, Vol. 75, No. 9. (2004), pp. 2787-2809.
    by Keir C Neuman, Steven M Block
    posted to howto optical review trapping tweezers by skoch3 to the group Koch_Lab on 2008-03-16 04:12:12 as *****
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