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Autore Papatsenko [15 articles]

Articoli aggiunti di recente dell'autore Papatsenko.
  • Homotypic regulatory clusters in Drosophila.
    Genome Res, Vol. 13, No. 4. (April 2003), pp. 579-588.
    by AP Lifanov, VJ Makeev, AG Nazina, DA Papatsenko
    posted to no-tag by tresch on 2008-06-05 13:41:59 as ** along with 1 person and 1 group indigoviolet EisenLab
  • ClusterDraw web server: a tool to identify and visualize clusters of binding motifs for transcription factors
    Bioinformatics, Vol. 23, No. 8. (15 April 2007), pp. 1032-1034.
    by Papatsenko, Dmitri
    posted to no-tag by jyuh on 2008-05-09 15:34:16 as ** along with 1 person and 1 group indigoviolet EisenLab
  • The role of binding site cluster strength in Bicoid-dependent patterning in Drosophila.
    Proc Natl Acad Sci U S A, Vol. 102, No. 14. (5 April 2005), pp. 4960-4965.
    by A Ochoa-Espinosa, G Yucel, L Kaplan, A Pare, N Pura, A Oberstein, D Papatsenko, S Small
    posted to cooperative_binding cis_regulatory_elements drosophila pattern_formation by emptyhb on 2008-01-21 22:21:30 as ** along with 1 person and 1 group adepace EisenLab
  • Statistical extraction of Drosophila cis-regulatory modules using exhaustive assessment of local word frequency.
    BMC Bioinformatics, Vol. 4 (22 December 2003)
    by AG Nazina, DA Papatsenko
    posted to algorithm enhancer-prediction by indigoviolet to the group EisenLab on 2007-12-12 09:21:45 as **
  • Conservation patterns in different functional sequence categories of divergent Drosophila species.
    Genomics, Vol. 88, No. 4. (October 2006), pp. 431-442.
    by D Papatsenko, A Kislyuk, M Levine, I Dubchak
    posted to no-tag by azazello on 2007-12-10 15:18:22 as **
  • A rationale for the enhanceosome and other evolutionarily constrained enhancers
    Current Biology, Vol. 17, No. 22. (20 November 2007), pp. R955-R957.
    by Dmitri Papatsenko, Mike Levine
    posted to drosophila enhancers by oelemento on 2007-11-20 17:34:49 as **
  • Evolution of the ventral midline in insect embryos.
    Dev Cell, Vol. 11, No. 6. (December 2006), pp. 895-902.
    by RP Zinzen, J Cande, M Ronshaugen, D Papatsenko, M Levine
    posted to cis-regulatory flies by dpollard to the group cis-regulatory-evolution on 2007-11-05 22:36:33 as ** along with 1 person and 1 group KingLab EisenLab
  • Distance preferences in the arrangement of binding motifs and hierarchical levels in organization of transcription regulatory information.
    Nucleic Acids Res, Vol. 31, No. 20. (15 October 2003), pp. 6016-6026.
    by VJ Makeev, AP Lifanov, AG Nazina, DA Papatsenko
    posted to binding_site cis_regulatory_elements drosophila grammar helical_phasing by dpollard to the group EisenLab on 2007-10-31 22:40:43 as read along with 2 people and 1 group oannes lusk Regulomics_UCHSC
  • Quantitative analysis of binding motifs mediating diverse spatial readouts of the Dorsal gradient in the Drosophila embryo.
    Proc Natl Acad Sci U S A, Vol. 102, No. 14. (5 April 2005), pp. 4966-4971.
    by D Papatsenko, M Levine
    posted to drosophila motifs by Stew on 2007-09-18 01:00:35 as ** along with 1 person and 1 group adepace EisenLab
  • Enhancer responses to similarly distributed antagonistic gradients in development.
    PLoS Comput Biol, Vol. 3, No. 5. (11 May 2007)
    by RP Zinzen, D Papatsenko
    posted to eisen_journal_club enhancer experssion_pattern in_depth_suggestion prediction by dpollard on 2007-06-13 22:22:18 as ** along with 1 group EisenLab
  • Enhancer Responses to Similarly Distributed Antagonistic Gradients in Development
    PLoS Computational Biology, Vol. 3, No. 5. (1 May 2007), e84.
    by Robert P Zinzen, Dmitri Papatsenko
    posted to development expression_pattern gene_expression model by dpollard on 2007-05-31 23:09:07 as *** along with 1 person and 1 group adepace EisenLab
  • Computational identification of regulatory DNAs underlying animal development
    Nature Methods, Vol. 2, No. 7., pp. 529-534.
    by Dmitri Papatsenko, Michael Levine
    posted to snb by balajis on 2007-03-12 05:22:52 as ** along with 1 person postrational
  • A self-organizing system of repressor gradients establishes segmental complexity in Drosophila.
    Nature, Vol. 426, No. 6968. (18 December 2003), pp. 849-853.
    by DE Clyde, MS Corado, X Wu, A Paré, D Papatsenko, S Small
    posted to tech--network_modeling key--expression_pattern key--binding_sites gene--kni gene--hb gene--eve by adepace on 2007-02-05 06:31:36 as ***** along with 1 group EisenLab
  • notes Extraction of functional binding sites from unique regulatory regions: the Drosophila early developmental enhancers.
    Genome Res, Vol. 12, No. 3. (March 2002), pp. 470-481.
    by DA Papatsenko, VJ Makeev, AP Lifanov, M Régnier, AG Nazina, C Desplan
    posted to motifpaper by dquest on 2006-09-29 22:41:40 as **
  • Computational Models for Neurogenic Gene Expression in the Drosophila Embryo.
    Curr Biol (1 June 2006)
    by Robert P P Zinzen, Kate Senger, Mike Levine, Dmitri Papatsenko
    posted to drosophila expression gene modeling by emilyhare on 2006-07-11 21:21:25 as *** along with 1 person and 1 group dpollard EisenLab
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